Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
Cdx1P18111 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Cdx1P18111 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC14.93□□□□□ -0.02
Cdx1P18111 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdx1P18111 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Cdx1P18111 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC14.92□□□□□ -0.02
Cdx1P18111 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
Cdx1P18111 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Cdx1P18111 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC14.92□□□□□ -0.02
Cdx1P18111 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC14.92□□□□□ -0.02
Cdx1P18111 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC14.92□□□□□ -0.02
Cdx1P18111 Flvcr1-202ENSMUST00000191946 1216 ntBASIC14.92□□□□□ -0.02
Cdx1P18111 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Cdx1P18111 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Cdx1P18111 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdx1P18111 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC14.92□□□□□ -0.02
Cdx1P18111 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC14.92□□□□□ -0.02
Cdx1P18111 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Cdx1P18111 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC14.91□□□□□ -0.02
Cdx1P18111 Cxcl14-202ENSMUST00000224801 1467 ntBASIC14.91□□□□□ -0.02
Cdx1P18111 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Cdx1P18111 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdx1P18111 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx1P18111 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx1P18111 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx1P18111 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC14.9□□□□□ -0.02
Cdx1P18111 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx1P18111 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx1P18111 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Cdx1P18111 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC14.9□□□□□ -0.02
Cdx1P18111 Gm8495-201ENSMUST00000188740 694 ntBASIC14.9□□□□□ -0.02
Cdx1P18111 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx1P18111 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Cdx1P18111 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Cdx1P18111 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx1P18111 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx1P18111 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdx1P18111 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC14.89□□□□□ -0.03
Cdx1P18111 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Cdx1P18111 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC14.89□□□□□ -0.03
Cdx1P18111 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Cdx1P18111 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC14.89□□□□□ -0.03
Cdx1P18111 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Cdx1P18111 Gm6139-201ENSMUST00000079261 882 ntBASIC14.89□□□□□ -0.03
Cdx1P18111 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdx1P18111 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Cdx1P18111 Gm9885-202ENSMUST00000186234 2209 ntBASIC14.89□□□□□ -0.03
Cdx1P18111 Gm9954-202ENSMUST00000198686 4725 ntBASIC14.89□□□□□ -0.03
Cdx1P18111 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC14.89□□□□□ -0.03
Cdx1P18111 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 81.6 ms