Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Clk4O35493 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clk4O35493 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clk4O35493 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clk4O35493 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clk4O35493 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Clk4O35493 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.77■□□□□ 0.44
Clk4O35493 Gm7514-201ENSMUST00000209475 934 ntBASIC17.77■□□□□ 0.44
Clk4O35493 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Clk4O35493 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Clk4O35493 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Clk4O35493 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Clk4O35493 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Clk4O35493 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Clk4O35493 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Clk4O35493 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Clk4O35493 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Clk4O35493 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Clk4O35493 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.75■□□□□ 0.43
Clk4O35493 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.75■□□□□ 0.43
Clk4O35493 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.75■□□□□ 0.43
Clk4O35493 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.75■□□□□ 0.43
Clk4O35493 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clk4O35493 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Clk4O35493 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Clk4O35493 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Clk4O35493 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC17.74■□□□□ 0.43
Clk4O35493 Gm7291-201ENSMUST00000199147 382 ntBASIC17.74■□□□□ 0.43
Clk4O35493 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Ap3s1-204ENSMUST00000225520 957 ntBASIC17.74■□□□□ 0.43
Clk4O35493 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
Clk4O35493 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Clk4O35493 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clk4O35493 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
Clk4O35493 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC17.73■□□□□ 0.43
Clk4O35493 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
Clk4O35493 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.73■□□□□ 0.43
Clk4O35493 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clk4O35493 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Clk4O35493 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.73■□□□□ 0.43
Clk4O35493 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clk4O35493 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.72■□□□□ 0.43
Clk4O35493 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Clk4O35493 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Clk4O35493 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Clk4O35493 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Clk4O35493 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clk4O35493 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms