Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Mir8098-201ENSMUST00000184011 137 ntBASIC18.85■□□□□ 0.61
Col6a3E9PWQ3 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a3E9PWQ3 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a3E9PWQ3 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a3E9PWQ3 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a3E9PWQ3 Gm5587-201ENSMUST00000206270 674 ntBASIC18.85■□□□□ 0.61
Col6a3E9PWQ3 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Auts2-212ENSMUST00000178555 309 ntBASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Gm27357-201ENSMUST00000183754 135 ntBASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Gm18206-201ENSMUST00000207027 926 ntBASIC18.84■□□□□ 0.61
Col6a3E9PWQ3 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col6a3E9PWQ3 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col6a3E9PWQ3 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col6a3E9PWQ3 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Col6a3E9PWQ3 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.83■□□□□ 0.6
Col6a3E9PWQ3 Gm28659-201ENSMUST00000188013 759 ntBASIC18.83■□□□□ 0.6
Col6a3E9PWQ3 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Col6a3E9PWQ3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Col6a3E9PWQ3 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 AC159093.1-201ENSMUST00000227779 380 ntBASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a3E9PWQ3 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Gm38285-201ENSMUST00000192928 922 ntBASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a3E9PWQ3 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 Gm11927-201ENSMUST00000118472 759 ntBASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a3E9PWQ3 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Mir5130-201ENSMUST00000175160 84 ntBASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Birc2-201ENSMUST00000054878 378 ntBASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a3E9PWQ3 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Mtag2-201ENSMUST00000058665 714 ntBASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a3E9PWQ3 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 Gm37292-201ENSMUST00000192062 758 ntBASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 Mir3081-201ENSMUST00000175305 84 ntBASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Col6a3E9PWQ3 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms