Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trbv1A0A0B4J1G7 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trbv1A0A0B4J1G7 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 AC121598.2-201ENSMUST00000228376 2325 ntBASIC14.57□□□□□ -0.08
Trbv1A0A0B4J1G7 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm9954-202ENSMUST00000198686 4725 ntBASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trbv1A0A0B4J1G7 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm5898-201ENSMUST00000121016 2071 ntBASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm43034-201ENSMUST00000198678 1364 ntBASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm27045-201ENSMUST00000182145 1402 ntBASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trbv1A0A0B4J1G7 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC14.54□□□□□ -0.08
Trbv1A0A0B4J1G7 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms