Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Atp6ap2-201ENSMUST00000033313 2324 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Slc26a8-201ENSMUST00000114764 3670 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Lekr1-201ENSMUST00000099075 2461 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Ftsj1-203ENSMUST00000115595 1656 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Igkv2-137-201ENSMUST00000103302 501 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Col8a1Q00780 n-R5s172-201ENSMUST00000104508 114 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Paqr5-202ENSMUST00000113990 1073 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm15054-201ENSMUST00000117393 281 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm12385-201ENSMUST00000117439 795 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm13526-201ENSMUST00000117970 189 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm25102-201ENSMUST00000122479 112 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm23657-201ENSMUST00000122623 294 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm16159-201ENSMUST00000126122 947 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm11722-201ENSMUST00000138702 534 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Igkv2-95-2-201ENSMUST00000166362 222 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm5538-201ENSMUST00000168156 1235 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm17129-201ENSMUST00000168168 505 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Obox2-203ENSMUST00000174076 782 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Vmn1r10-201ENSMUST00000176073 936 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Trav5d-4-201ENSMUST00000179701 343 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Trav5n-4-201ENSMUST00000179997 343 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm18356-201ENSMUST00000185677 623 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm29435-201ENSMUST00000191310 689 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm36398-201ENSMUST00000192255 696 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 1700034J04Rik-201ENSMUST00000192736 750 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm30312-201ENSMUST00000194516 696 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm37729-201ENSMUST00000194761 1172 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm18428-201ENSMUST00000194986 791 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Spa17-201ENSMUST00000002013 696 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 5033423K11Rik-202ENSMUST00000202802 1162 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm29759-201ENSMUST00000205860 327 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Cers3-202ENSMUST00000208521 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Olfr472-202ENSMUST00000210420 1083 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm1943-201ENSMUST00000211890 174 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Pln-203ENSMUST00000218468 760 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm5655-201ENSMUST00000221078 901 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 AC159263.2-201ENSMUST00000221593 411 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 CT030170.6-202ENSMUST00000223186 544 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 AC153646.1-201ENSMUST00000223229 1279 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 9230112D13Rik-201ENSMUST00000022325 778 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Vmn1r20-201ENSMUST00000226808 912 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Apoh-201ENSMUST00000000049 1190 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Desi2-202ENSMUST00000069568 1193 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Olfr1145-201ENSMUST00000079711 945 ntAPPRIS ALT2 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Olfr1465-201ENSMUST00000080142 924 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Olfr206-201ENSMUST00000084791 1005 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Vmn1r27-201ENSMUST00000095862 912 ntAPPRIS P2 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Vmn2r125-201ENSMUST00000096794 1110 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Olfr1045-201ENSMUST00000099904 948 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Arhgap17-211ENSMUST00000207010 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm37699-201ENSMUST00000194753 3338 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Neu3-201ENSMUST00000036331 3341 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Ogfod1-201ENSMUST00000060632 5214 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Krr1-203ENSMUST00000163048 5023 ntAPPRIS P2 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Mtm1-206ENSMUST00000114621 3257 ntTSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm29660-201ENSMUST00000185631 2166 ntTSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm29309-201ENSMUST00000186251 2166 ntTSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm28317-201ENSMUST00000187200 2166 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm28254-201ENSMUST00000189207 2166 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm29063-201ENSMUST00000190236 2166 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm29632-201ENSMUST00000190335 2166 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Gm28538-201ENSMUST00000190919 2166 ntTSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Rnase4-202ENSMUST00000169895 1460 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Fer-201ENSMUST00000000129 3008 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Zfp473-207ENSMUST00000149011 9230 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Atg7-202ENSMUST00000169310 3895 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 Olfr1564-204ENSMUST00000213751 5418 ntAPPRIS ALT1 TSL 5 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Zkscan7-201ENSMUST00000063980 4722 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
Col8a1Q00780 AC164437.4-204ENSMUST00000227169 4024 ntBASIC6.98□□□□□ -1.29
Col8a1Q00780 Lrtm1-202ENSMUST00000224708 1646 ntAPPRIS ALT2 BASIC6.98□□□□□ -1.29
Col8a1Q00780 Fam198a-201ENSMUST00000043011 3623 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Siglec1-201ENSMUST00000028794 6387 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Def8-205ENSMUST00000108832 3242 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Def8-201ENSMUST00000001522 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Pgm2-202ENSMUST00000102783 2523 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 H2-M10.5-201ENSMUST00000041531 1383 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Fam160a1-202ENSMUST00000118408 4445 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
Col8a1Q00780 4930433I11Rik-202ENSMUST00000206529 2963 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Ank3-219ENSMUST00000182437 3113 ntTSL 5 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Ica1l-206ENSMUST00000191251 3415 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Sycp1-201ENSMUST00000029448 3437 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Gm35147-201ENSMUST00000208383 1820 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Gpnmb-201ENSMUST00000031840 3701 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Gm42907-201ENSMUST00000199793 2148 ntBASIC6.97□□□□□ -1.29
Col8a1Q00780 Prom1-214ENSMUST00000197706 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Gm38012-201ENSMUST00000193022 3029 ntBASIC6.97□□□□□ -1.29
Col8a1Q00780 Prnd-204ENSMUST00000110172 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 D5Ertd615e-202ENSMUST00000197016 3911 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Zfp180-201ENSMUST00000068975 3901 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Smcr8-202ENSMUST00000102667 3544 ntBASIC6.97□□□□□ -1.29
Col8a1Q00780 Ighv1-31-201ENSMUST00000103511 294 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Ighv1-37-201ENSMUST00000103514 348 ntAPPRIS ALT2 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Ighv1-42-201ENSMUST00000103516 294 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Ighv1-43-201ENSMUST00000103517 294 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Ighv1-66-201ENSMUST00000103537 399 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Ighv1-75-201ENSMUST00000103544 373 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Stmn1-203ENSMUST00000105868 967 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
Col8a1Q00780 Kxd1-203ENSMUST00000118850 992 ntTSL 2 BASIC6.97□□□□□ -1.29
Col8a1Q00780 Gm11907-201ENSMUST00000118918 1007 ntBASIC6.97□□□□□ -1.29
Col8a1Q00780 Speer4d-202ENSMUST00000119100 857 ntTSL 2 BASIC6.97□□□□□ -1.29
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms