Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ighv1-26-201ENSMUST00000103510 351 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Cux1P53564 Gm25379-201ENSMUST00000104338 114 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm11850-201ENSMUST00000119679 479 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm12955-201ENSMUST00000119689 957 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Phf11d-203ENSMUST00000161031 1130 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
Cux1P53564 Gm7412-201ENSMUST00000191692 605 ntBASIC11.76□□□□□ -0.53
Cux1P53564 1700034J04Rik-201ENSMUST00000192736 750 ntBASIC11.76□□□□□ -0.53
Cux1P53564 1700028E10Rik-206ENSMUST00000202216 557 ntTSL 3 BASIC11.76□□□□□ -0.53
Cux1P53564 Gm19065-201ENSMUST00000203269 788 ntTSL 5 BASIC11.76□□□□□ -0.53
Cux1P53564 Gm32884-201ENSMUST00000205528 732 ntTSL 5 BASIC11.76□□□□□ -0.53
Cux1P53564 Gm34215-201ENSMUST00000221599 355 ntTSL 5 BASIC11.76□□□□□ -0.53
Cux1P53564 Myl12a-201ENSMUST00000024846 980 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Cux1P53564 Krtap26-1-201ENSMUST00000095934 973 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Cux1P53564 Gm10248-201ENSMUST00000090409 2731 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Gm16478-201ENSMUST00000208113 5084 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Dlc1-206ENSMUST00000163663 5113 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Cux1P53564 Sntg1-207ENSMUST00000140295 4887 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Gm11872-201ENSMUST00000141819 2219 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Casp14-202ENSMUST00000219237 2200 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Cux1P53564 Lbhd1-202ENSMUST00000187504 3164 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
Cux1P53564 Gm38352-201ENSMUST00000194459 2557 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm5493-201ENSMUST00000182063 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Npr3-204ENSMUST00000228489 1969 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm36938-201ENSMUST00000191612 2696 ntBASIC11.76□□□□□ -0.53
Cux1P53564 March6-201ENSMUST00000090227 6260 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Abca9-201ENSMUST00000044850 6384 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Creb1-202ENSMUST00000087366 8364 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Gm37074-201ENSMUST00000193444 1843 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Caps2-201ENSMUST00000092176 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 A730011C13Rik-202ENSMUST00000141787 1877 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 AC101875.1-201ENSMUST00000222666 2223 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Limk2-203ENSMUST00000101642 3693 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 B930095G15Rik-201ENSMUST00000130256 4715 ntTSL 2 BASIC11.76□□□□□ -0.53
Cux1P53564 Olfr78-202ENSMUST00000168007 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Rpl31-ps10-201ENSMUST00000116034 378 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm7821-201ENSMUST00000117111 788 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Rpl31-ps11-201ENSMUST00000119898 377 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Rpl31-ps12-201ENSMUST00000119957 375 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm9378-201ENSMUST00000120315 471 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm12104-201ENSMUST00000120359 979 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm14353-201ENSMUST00000122200 869 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm14990-201ENSMUST00000122354 445 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Olfr636-ps1-201ENSMUST00000134827 935 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm13982-201ENSMUST00000138372 755 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Mir1930-201ENSMUST00000158799 84 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm9047-201ENSMUST00000171317 682 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 Krtap11-1-201ENSMUST00000171542 1008 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Cux1P53564 Rpl31-ps8-201ENSMUST00000181935 378 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Rpl31-206ENSMUST00000195123 356 ntTSL 3 BASIC11.76□□□□□ -0.53
Cux1P53564 Gm44613-201ENSMUST00000205637 877 ntTSL 5 BASIC11.76□□□□□ -0.53
Cux1P53564 Gm4585-201ENSMUST00000207218 452 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Olfr97-202ENSMUST00000207414 933 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Cux1P53564 Helt-202ENSMUST00000210652 1282 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cux1P53564 AC159542.1-201ENSMUST00000218201 450 ntTSL 3 BASIC11.76□□□□□ -0.53
Cux1P53564 Olfr683-201ENSMUST00000061284 960 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Rpl31-ps4-201ENSMUST00000079114 390 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Rpl31-ps9-201ENSMUST00000086596 378 ntBASIC11.76□□□□□ -0.53
Cux1P53564 Gm7265-201ENSMUST00000192735 3502 ntBASIC11.75□□□□□ -0.53
Cux1P53564 Brip1os-201ENSMUST00000128960 4423 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 Gria1-202ENSMUST00000094179 5399 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 9230106D20Rik-201ENSMUST00000052806 1406 ntTSL 5 BASIC11.75□□□□□ -0.53
Cux1P53564 Als2-201ENSMUST00000027178 6342 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 Rab43-201ENSMUST00000032134 4308 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 Smchd1-201ENSMUST00000127430 7052 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Cux1P53564 AC154171.3-201ENSMUST00000224519 2505 ntBASIC11.75□□□□□ -0.53
Cux1P53564 1700074P13Rik-201ENSMUST00000031935 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 9530027J09Rik-201ENSMUST00000180584 1684 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 Fmo4-202ENSMUST00000111525 2683 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Cux1P53564 Cbx3-204ENSMUST00000114446 1719 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Cux1P53564 Gm11657-201ENSMUST00000137175 337 ntTSL 3 BASIC11.75□□□□□ -0.53
Cux1P53564 Gm3208-201ENSMUST00000168281 427 ntBASIC11.75□□□□□ -0.53
Cux1P53564 Gm25640-201ENSMUST00000175378 125 ntBASIC11.75□□□□□ -0.53
Cux1P53564 Gm29066-201ENSMUST00000188502 452 ntTSL 3 BASIC11.75□□□□□ -0.53
Cux1P53564 Gm38373-201ENSMUST00000192042 288 ntBASIC11.75□□□□□ -0.53
Cux1P53564 Gm43595-201ENSMUST00000196464 1071 ntBASIC11.75□□□□□ -0.53
Cux1P53564 Gm43147-201ENSMUST00000196944 542 ntBASIC11.75□□□□□ -0.53
Cux1P53564 Gm44856-201ENSMUST00000206639 304 ntBASIC11.75□□□□□ -0.53
Cux1P53564 Gm35021-202ENSMUST00000210289 961 ntTSL 5 BASIC11.75□□□□□ -0.53
Cux1P53564 AC192091.1-201ENSMUST00000218668 439 ntBASIC11.75□□□□□ -0.53
Cux1P53564 Gm36607-201ENSMUST00000222750 1087 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 Olfr1445-201ENSMUST00000049624 1001 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Cux1P53564 Klrc2-201ENSMUST00000071920 1098 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Cux1P53564 Trappc3l-201ENSMUST00000095758 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 Olfr1243-201ENSMUST00000099775 918 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Cux1P53564 Il9r-205ENSMUST00000145401 4482 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 Rab7b-202ENSMUST00000064679 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 Il12a-201ENSMUST00000029345 1303 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Cux1P53564 Dach2-205ENSMUST00000113382 5155 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 4921534H16Rik-201ENSMUST00000162370 1392 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cux1P53564 CT025639.1-201ENSMUST00000223906 1375 ntBASIC11.75□□□□□ -0.53
Cux1P53564 Olfr319-203ENSMUST00000215962 2500 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Cux1P53564 Zfp938-201ENSMUST00000041264 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cux1P53564 Gm12346-201ENSMUST00000121455 2255 ntBASIC11.74□□□□□ -0.53
Cux1P53564 Syn3-201ENSMUST00000120638 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cux1P53564 Bahcc1-203ENSMUST00000122148 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Cux1P53564 Aasdh-201ENSMUST00000069709 3381 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Cux1P53564 Vmn1r40-204ENSMUST00000228485 2689 ntBASIC11.74□□□□□ -0.53
Cux1P53564 Epn2-212ENSMUST00000178202 4317 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
Cux1P53564 A730085K08Rik-201ENSMUST00000177015 2013 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Cux1P53564 Zmym5-203ENSMUST00000173954 5357 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 76.3 ms