Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Scgb1b17-201ENSMUST00000187081 417 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Col18a1P39061 Scgb1b10-201ENSMUST00000187257 417 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Col18a1P39061 Scgb1b15-201ENSMUST00000189118 417 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Col18a1P39061 Gm37439-201ENSMUST00000193150 856 ntBASIC10.08□□□□□ -0.8
Col18a1P39061 Gm42767-201ENSMUST00000198583 632 ntBASIC10.08□□□□□ -0.8
Col18a1P39061 Gm30708-201ENSMUST00000202183 312 ntBASIC10.08□□□□□ -0.8
Col18a1P39061 Gm44091-201ENSMUST00000205212 649 ntBASIC10.08□□□□□ -0.8
Col18a1P39061 Gm5654-201ENSMUST00000217787 475 ntBASIC10.08□□□□□ -0.8
Col18a1P39061 AC131187.2-201ENSMUST00000223936 994 ntBASIC10.08□□□□□ -0.8
Col18a1P39061 Mir138-1-201ENSMUST00000083480 99 ntBASIC10.08□□□□□ -0.8
Col18a1P39061 Gm24032-201ENSMUST00000083932 159 ntBASIC10.08□□□□□ -0.8
Col18a1P39061 Faddos-201ENSMUST00000097928 1053 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Col18a1P39061 A530021J07Rik-202ENSMUST00000207727 1406 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Col18a1P39061 Tmem87a-203ENSMUST00000110729 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col18a1P39061 Map2-206ENSMUST00000114017 4981 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col18a1P39061 Rgsl1-203ENSMUST00000141249 1752 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Col18a1P39061 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col18a1P39061 Fgfbp1-202ENSMUST00000199481 2191 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Col18a1P39061 9630001P10Rik-202ENSMUST00000181335 3006 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Col18a1P39061 AC164437.4-204ENSMUST00000227169 4024 ntBASIC10.08□□□□□ -0.8
Col18a1P39061 Celf5-202ENSMUST00000119060 4166 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Col18a1P39061 Adamts4-202ENSMUST00000111315 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Gramd1b-203ENSMUST00000119373 3857 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Tll2-201ENSMUST00000025986 3369 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Gm26719-201ENSMUST00000180395 3220 ntTSL 5 BASIC10.07□□□□□ -0.8
Col18a1P39061 AC158686.1-201ENSMUST00000218068 2332 ntBASIC10.07□□□□□ -0.8
Col18a1P39061 Ddx25-201ENSMUST00000034612 6934 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Mbd3l2-202ENSMUST00000213777 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Col18a1P39061 Igkv6-20-201ENSMUST00000103388 375 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Col18a1P39061 Klra3-202ENSMUST00000111998 1238 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Gm4342-201ENSMUST00000118982 367 ntBASIC10.07□□□□□ -0.8
Col18a1P39061 Gm14375-201ENSMUST00000119490 855 ntBASIC10.07□□□□□ -0.8
Col18a1P39061 Gm12827-201ENSMUST00000132690 660 ntTSL 3 BASIC10.07□□□□□ -0.8
Col18a1P39061 Gm26801-201ENSMUST00000180591 1219 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 0610031O16Rik-204ENSMUST00000185122 825 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Nanog-ps2-201ENSMUST00000190988 529 ntBASIC10.07□□□□□ -0.8
Col18a1P39061 Olfr401-201ENSMUST00000079827 948 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Col18a1P39061 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Col18a1P39061 Tacc2-208ENSMUST00000207549 3492 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Gpbp1-202ENSMUST00000091236 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Gm12436-201ENSMUST00000131099 2959 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC10.07□□□□□ -0.8
Col18a1P39061 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Col18a1P39061 Osmr-201ENSMUST00000022746 5491 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 AC154404.1-201ENSMUST00000223601 2077 ntBASIC10.07□□□□□ -0.8
Col18a1P39061 Gm9750-201ENSMUST00000142025 2017 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Gm6679-201ENSMUST00000191467 1869 ntBASIC10.07□□□□□ -0.8
Col18a1P39061 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Col18a1P39061 Ift122-203ENSMUST00000112925 4122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Chrnb4-201ENSMUST00000034854 3723 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col18a1P39061 Gm42535-201ENSMUST00000197312 1399 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Gm22774-201ENSMUST00000102084 109 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Trbv29-201ENSMUST00000103281 353 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Col18a1P39061 Gm25785-201ENSMUST00000104129 125 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Gm9005-201ENSMUST00000119908 607 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Gm23386-201ENSMUST00000158585 144 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Serpina3e-ps-201ENSMUST00000165968 1228 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 A26c2-201ENSMUST00000207359 997 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Col18a1P39061 AC127242.3-201ENSMUST00000222009 580 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 AC165157.1-201ENSMUST00000222981 580 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 AC164294.1-201ENSMUST00000224682 688 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Ap3b2-201ENSMUST00000082090 3804 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 AC163342.1-201ENSMUST00000216533 2718 ntTSL 5 BASIC10.06□□□□□ -0.8
Col18a1P39061 Gm6284-201ENSMUST00000209609 4287 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Mst1r-201ENSMUST00000035203 4722 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Bcas3-204ENSMUST00000108056 2925 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Frmpd1-201ENSMUST00000044773 4812 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Cr1l-204ENSMUST00000193094 2776 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Col18a1P39061 Acmsd-201ENSMUST00000038006 2717 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Gm4780-202ENSMUST00000215200 2644 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
Col18a1P39061 Ddx3x-201ENSMUST00000000804 4692 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Lpin2-204ENSMUST00000129635 5640 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 4930554C24Rik-203ENSMUST00000216802 1346 ntTSL 5 BASIC10.06□□□□□ -0.8
Col18a1P39061 Nipal4-201ENSMUST00000020679 3444 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Specc1l-201ENSMUST00000040105 5928 ntTSL 5 BASIC10.06□□□□□ -0.8
Col18a1P39061 Kidins220-202ENSMUST00000220459 5381 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Traj18-201ENSMUST00000103723 66 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Col18a1P39061 Gm25498-201ENSMUST00000104424 129 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Gm11920-201ENSMUST00000118491 563 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Gm15349-201ENSMUST00000121154 204 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Gm13430-201ENSMUST00000121366 288 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Gm8922-201ENSMUST00000170057 1167 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Col18a1P39061 Dynlrb2-202ENSMUST00000213007 527 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Gm29154-209ENSMUST00000213614 878 ntTSL 5 BASIC10.06□□□□□ -0.8
Col18a1P39061 AC153537.1-201ENSMUST00000215530 858 ntTSL 5 BASIC10.06□□□□□ -0.8
Col18a1P39061 AC124601.1-201ENSMUST00000220531 135 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 AC123920.1-201ENSMUST00000221449 384 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 BC061195-201ENSMUST00000088133 577 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 1700003E24Rik-201ENSMUST00000088134 577 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col18a1P39061 Gm28651-202ENSMUST00000227968 2693 ntBASIC10.06□□□□□ -0.8
Col18a1P39061 Gm45174-201ENSMUST00000208884 3065 ntBASIC10.05□□□□□ -0.8
Col18a1P39061 Wdr48-208ENSMUST00000217472 2997 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col18a1P39061 Faf2-203ENSMUST00000126071 4322 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col18a1P39061 Rtl5-201ENSMUST00000113631 4653 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 180.5 ms