Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Dclre1c-202ENSMUST00000100463 3705 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col18a1P39061 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col18a1P39061 Rai14-202ENSMUST00000169385 4759 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col18a1P39061 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col18a1P39061 A830036E02Rik-202ENSMUST00000128904 2768 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col18a1P39061 Tmem63c-202ENSMUST00000131878 3311 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Col18a1P39061 Ttc39b-203ENSMUST00000102823 8831 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Gm3455-201ENSMUST00000204812 1954 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Gm38099-201ENSMUST00000193280 3170 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Col18a1P39061 Adhfe1-203ENSMUST00000144177 3239 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Gm26720-201ENSMUST00000181260 3538 ntTSL 5 BASIC10.17□□□□□ -0.78
Col18a1P39061 Cfap161-202ENSMUST00000119134 2868 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 H3f3a-ps1-201ENSMUST00000119546 410 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Gm12634-201ENSMUST00000122157 992 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Mir7072-201ENSMUST00000184542 60 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Gm38068-201ENSMUST00000192546 540 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Gm37901-201ENSMUST00000195107 514 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Pttg1-202ENSMUST00000020687 741 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Gm45703-201ENSMUST00000212293 891 ntTSL 5 BASIC10.17□□□□□ -0.78
Col18a1P39061 Gm18631-201ENSMUST00000223125 1043 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Gm2754-201ENSMUST00000223383 589 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Olfr930-201ENSMUST00000058789 1101 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
Col18a1P39061 Gm10271-201ENSMUST00000092165 156 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Col18a1P39061 Prdm1-202ENSMUST00000105490 4025 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Ston1-201ENSMUST00000064035 3287 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Col18a1P39061 Proz-201ENSMUST00000033822 3361 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Ccdc171-201ENSMUST00000053414 4525 ntAPPRIS P2 TSL 5 BASIC10.17□□□□□ -0.78
Col18a1P39061 Dgkg-202ENSMUST00000089925 3555 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 4931431C16Rik-201ENSMUST00000124643 2735 ntTSL 2 BASIC10.17□□□□□ -0.78
Col18a1P39061 Gm44769-201ENSMUST00000206120 2809 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Smco3-203ENSMUST00000203468 1791 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 4930447C04Rik-208ENSMUST00000136075 1970 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Col18a1P39061 Dclre1b-201ENSMUST00000029435 4345 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Sema4d-202ENSMUST00000110039 4415 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Fto-202ENSMUST00000125471 3887 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Gm26645-201ENSMUST00000181076 1316 ntBASIC10.17□□□□□ -0.78
Col18a1P39061 Tyw1-202ENSMUST00000044204 4698 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Tcp10a-201ENSMUST00000095726 2442 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Arpp21-230ENSMUST00000172380 3366 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 Tyms-201ENSMUST00000026846 3163 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col18a1P39061 B230364G03Rik-201ENSMUST00000181479 1374 ntTSL 2 BASIC10.16□□□□□ -0.78
Col18a1P39061 Dock6-207ENSMUST00000217336 6880 ntAPPRIS P2 TSL 5 BASIC10.16□□□□□ -0.78
Col18a1P39061 Smim8-205ENSMUST00000108134 782 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm16056-201ENSMUST00000119293 135 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 4931428L18Rik-201ENSMUST00000127775 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm22882-201ENSMUST00000157749 124 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Gm6726-201ENSMUST00000172786 681 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Gm43656-201ENSMUST00000197882 434 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Gm43568-202ENSMUST00000198427 476 ntTSL 3 BASIC10.16□□□□□ -0.78
Col18a1P39061 Pomp-203ENSMUST00000201376 383 ntTSL 3 BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm43762-201ENSMUST00000201521 295 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Gm46424-201ENSMUST00000221567 168 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Olfr1445-201ENSMUST00000049624 1001 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
Col18a1P39061 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Mcf2l-222ENSMUST00000173099 6081 ntTSL 5 BASIC10.16□□□□□ -0.78
Col18a1P39061 Brd8-204ENSMUST00000115766 4258 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Trim9-201ENSMUST00000110520 4156 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Slc2a12-201ENSMUST00000042261 4167 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Zmym1-203ENSMUST00000106102 3852 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Ugt1a6b-202ENSMUST00000113138 2303 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Col18a1P39061 Spata31d1a-202ENSMUST00000224469 1616 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Ace2-201ENSMUST00000073973 3422 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Sap18-204ENSMUST00000128764 5125 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Apol11b-202ENSMUST00000180949 2261 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Bmf-201ENSMUST00000090219 4642 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm16026-206ENSMUST00000163068 2741 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Pira2-201ENSMUST00000108615 3462 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm15922-201ENSMUST00000118068 3462 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Dgcr2-204ENSMUST00000117945 4003 ntAPPRIS ALT1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Hivep1-201ENSMUST00000060148 8753 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Col18a1P39061 Olfr1275-203ENSMUST00000217539 1661 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm2694-201ENSMUST00000180700 2314 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Serpina3f-202ENSMUST00000121337 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Mettl6-205ENSMUST00000227777 2762 ntAPPRIS ALT2 BASIC10.16□□□□□ -0.78
Col18a1P39061 B020031H02Rik-201ENSMUST00000209977 3673 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Cyp24a1-201ENSMUST00000038824 3560 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 AC160562.1-201ENSMUST00000216170 3468 ntTSL 5 BASIC10.16□□□□□ -0.78
Col18a1P39061 Rian-202ENSMUST00000181253 2355 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Sec16b-203ENSMUST00000111700 4369 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm22284-201ENSMUST00000104132 132 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Mobp-203ENSMUST00000111627 481 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm14612-201ENSMUST00000121522 881 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Mir5110-201ENSMUST00000175537 87 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Scarletltr-201ENSMUST00000176950 305 ntTSL 5 BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm5272-201ENSMUST00000182730 982 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Mir378d-201ENSMUST00000184232 110 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Agr2-201ENSMUST00000020898 784 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm31172-201ENSMUST00000210068 321 ntTSL 3 BASIC10.16□□□□□ -0.78
Col18a1P39061 Gm45279-201ENSMUST00000210315 391 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 AC124184.1-201ENSMUST00000218167 283 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 AC131029.2-201ENSMUST00000226696 628 ntBASIC10.16□□□□□ -0.78
Col18a1P39061 Xntrpc-201ENSMUST00000084843 4173 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Col18a1P39061 Tpp2-207ENSMUST00000188313 4631 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms