Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Gm12251-201ENSMUST00000117893 792 ntBASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Gm12821-201ENSMUST00000120022 600 ntBASIC18.4■□□□□ 0.54
Lima1Q9ERG0 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Lima1Q9ERG0 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Lima1Q9ERG0 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Lima1Q9ERG0 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lima1Q9ERG0 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Gm27454-201ENSMUST00000185090 204 ntBASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Serp2-204ENSMUST00000228055 705 ntBASIC18.36■□□□□ 0.53
Lima1Q9ERG0 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lima1Q9ERG0 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Mir7075-201ENSMUST00000184187 82 ntBASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Flvcr1-202ENSMUST00000191946 1216 ntBASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lima1Q9ERG0 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms