Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.94■□□□□ 0.94
Ushbp1Q8R370 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ushbp1Q8R370 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ushbp1Q8R370 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ushbp1Q8R370 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ushbp1Q8R370 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Gm10653-202ENSMUST00000139570 835 ntBASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.93■□□□□ 0.94
Ushbp1Q8R370 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ushbp1Q8R370 Gm12441-201ENSMUST00000121806 588 ntBASIC20.92■□□□□ 0.94
Ushbp1Q8R370 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ushbp1Q8R370 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ushbp1Q8R370 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ushbp1Q8R370 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ushbp1Q8R370 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ushbp1Q8R370 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ushbp1Q8R370 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Ushbp1Q8R370 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ushbp1Q8R370 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ushbp1Q8R370 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Ushbp1Q8R370 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ushbp1Q8R370 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ushbp1Q8R370 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ushbp1Q8R370 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Mir5133-201ENSMUST00000174955 77 ntBASIC20.89■□□□□ 0.93
Ushbp1Q8R370 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ushbp1Q8R370 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.88■□□□□ 0.93
Ushbp1Q8R370 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ushbp1Q8R370 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms