Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc28aQ8CEI3 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc28aQ8CEI3 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28aQ8CEI3 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.68■□□□□ 0.74
Ccdc28aQ8CEI3 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC19.68■□□□□ 0.74
Ccdc28aQ8CEI3 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28aQ8CEI3 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28aQ8CEI3 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Ccdc28aQ8CEI3 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28aQ8CEI3 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc28aQ8CEI3 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.68■□□□□ 0.74
Ccdc28aQ8CEI3 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc28aQ8CEI3 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Gm43137-201ENSMUST00000198052 594 ntBASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.66■□□□□ 0.74
Ccdc28aQ8CEI3 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28aQ8CEI3 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28aQ8CEI3 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28aQ8CEI3 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28aQ8CEI3 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Ccdc28aQ8CEI3 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28aQ8CEI3 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28aQ8CEI3 AC165080.2-201ENSMUST00000217491 1530 ntBASIC19.65■□□□□ 0.74
Ccdc28aQ8CEI3 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc28aQ8CEI3 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ccdc28aQ8CEI3 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.64■□□□□ 0.74
Ccdc28aQ8CEI3 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.64■□□□□ 0.74
Ccdc28aQ8CEI3 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Gm7860-201ENSMUST00000121190 879 ntBASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Ccdc28aQ8CEI3 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 AC137127.1-201ENSMUST00000213466 1078 ntBASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc28aQ8CEI3 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc28aQ8CEI3 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms