Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.31■□□□□ 0.68
Trub1Q8C0D0 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trub1Q8C0D0 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trub1Q8C0D0 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trub1Q8C0D0 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trub1Q8C0D0 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Trub1Q8C0D0 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Gm42778-201ENSMUST00000199644 553 ntBASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trub1Q8C0D0 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Trub1Q8C0D0 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trub1Q8C0D0 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trub1Q8C0D0 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Trub1Q8C0D0 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trub1Q8C0D0 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.27■□□□□ 0.68
Trub1Q8C0D0 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Trub1Q8C0D0 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trub1Q8C0D0 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.27■□□□□ 0.67
Trub1Q8C0D0 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Trub1Q8C0D0 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Trub1Q8C0D0 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trub1Q8C0D0 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trub1Q8C0D0 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trub1Q8C0D0 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trub1Q8C0D0 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trub1Q8C0D0 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trub1Q8C0D0 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trub1Q8C0D0 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trub1Q8C0D0 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trub1Q8C0D0 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Gm10033-202ENSMUST00000211874 928 ntBASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trub1Q8C0D0 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trub1Q8C0D0 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trub1Q8C0D0 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trub1Q8C0D0 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trub1Q8C0D0 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.23■□□□□ 0.67
Trub1Q8C0D0 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trub1Q8C0D0 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms