Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Usp47Q8BY87 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Usp47Q8BY87 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Usp47Q8BY87 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Usp47Q8BY87 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
Usp47Q8BY87 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Usp47Q8BY87 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
Usp47Q8BY87 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Usp47Q8BY87 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
Usp47Q8BY87 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Usp47Q8BY87 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Usp47Q8BY87 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Usp47Q8BY87 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Usp47Q8BY87 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Usp47Q8BY87 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Usp47Q8BY87 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Usp47Q8BY87 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Usp47Q8BY87 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Usp47Q8BY87 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Usp47Q8BY87 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Usp47Q8BY87 Rncr4-201ENSMUST00000194541 2234 ntBASIC26.49■■□□□ 1.83
Usp47Q8BY87 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
Usp47Q8BY87 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC26.49■■□□□ 1.83
Usp47Q8BY87 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Usp47Q8BY87 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Usp47Q8BY87 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Usp47Q8BY87 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC26.49■■□□□ 1.83
Usp47Q8BY87 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC26.49■■□□□ 1.83
Usp47Q8BY87 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Usp47Q8BY87 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Usp47Q8BY87 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
Usp47Q8BY87 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC26.48■■□□□ 1.83
Usp47Q8BY87 Gm37856-201ENSMUST00000191634 999 ntBASIC26.48■■□□□ 1.83
Usp47Q8BY87 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Usp47Q8BY87 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Usp47Q8BY87 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC26.47■■□□□ 1.83
Usp47Q8BY87 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC26.47■■□□□ 1.83
Usp47Q8BY87 AC140264.2-202ENSMUST00000218746 817 ntBASIC26.47■■□□□ 1.83
Usp47Q8BY87 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
Usp47Q8BY87 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Usp47Q8BY87 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
Usp47Q8BY87 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
Usp47Q8BY87 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
Usp47Q8BY87 Gm27275-201ENSMUST00000184318 272 ntBASIC26.46■■□□□ 1.83
Usp47Q8BY87 Gm44549-201ENSMUST00000208351 577 ntBASIC26.46■■□□□ 1.83
Usp47Q8BY87 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Usp47Q8BY87 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC26.46■■□□□ 1.83
Usp47Q8BY87 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Usp47Q8BY87 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Usp47Q8BY87 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC26.46■■□□□ 1.83
Usp47Q8BY87 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
Usp47Q8BY87 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Usp47Q8BY87 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
Usp47Q8BY87 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Usp47Q8BY87 BC021767-201ENSMUST00000126387 1716 ntBASIC26.46■■□□□ 1.83
Usp47Q8BY87 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Usp47Q8BY87 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
Usp47Q8BY87 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Usp47Q8BY87 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Usp47Q8BY87 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Usp47Q8BY87 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Usp47Q8BY87 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Usp47Q8BY87 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Usp47Q8BY87 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Usp47Q8BY87 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Usp47Q8BY87 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Usp47Q8BY87 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Usp47Q8BY87 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Usp47Q8BY87 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Usp47Q8BY87 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Usp47Q8BY87 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC26.44■■□□□ 1.82
Usp47Q8BY87 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Usp47Q8BY87 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
Usp47Q8BY87 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Usp47Q8BY87 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
Usp47Q8BY87 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC26.43■■□□□ 1.82
Usp47Q8BY87 Gm37805-201ENSMUST00000192612 1094 ntBASIC26.43■■□□□ 1.82
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms