Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Lig4Q8BTF7 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Gm43545-201ENSMUST00000196765 2779 ntBASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Lig4Q8BTF7 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Lig4Q8BTF7 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lig4Q8BTF7 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lig4Q8BTF7 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Lig4Q8BTF7 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.75■□□□□ 0.75
Lig4Q8BTF7 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lig4Q8BTF7 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.75■□□□□ 0.75
Lig4Q8BTF7 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lig4Q8BTF7 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lig4Q8BTF7 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Lig4Q8BTF7 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig4Q8BTF7 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Lig4Q8BTF7 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Gm4968-201ENSMUST00000071458 858 ntBASIC19.71■□□□□ 0.75
Lig4Q8BTF7 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Gm12441-201ENSMUST00000121806 588 ntBASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Lig4Q8BTF7 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms