Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Rif1Q6PR54 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Rif1Q6PR54 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Rif1Q6PR54 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC15.76■□□□□ 0.11
Rif1Q6PR54 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC15.76■□□□□ 0.11
Rif1Q6PR54 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Rif1Q6PR54 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Rif1Q6PR54 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Rif1Q6PR54 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
Rif1Q6PR54 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Rif1Q6PR54 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Rif1Q6PR54 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Rif1Q6PR54 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Rif1Q6PR54 Gm27032-201ENSMUST00000183124 1116 ntBASIC15.75■□□□□ 0.11
Rif1Q6PR54 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Rif1Q6PR54 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Rif1Q6PR54 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Rif1Q6PR54 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Rif1Q6PR54 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Rif1Q6PR54 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Rif1Q6PR54 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC15.73■□□□□ 0.11
Rif1Q6PR54 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Rif1Q6PR54 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Rif1Q6PR54 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Rif1Q6PR54 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Rif1Q6PR54 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
Rif1Q6PR54 Gm24589-201ENSMUST00000116692 94 ntBASIC15.73■□□□□ 0.11
Rif1Q6PR54 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC15.73■□□□□ 0.11
Rif1Q6PR54 Gm7712-202ENSMUST00000222331 1510 ntBASIC15.72■□□□□ 0.11
Rif1Q6PR54 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Gm42418-201ENSMUST00000182010 1831 ntBASIC15.72■□□□□ 0.11
Rif1Q6PR54 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Gm38285-201ENSMUST00000192928 922 ntBASIC15.72■□□□□ 0.11
Rif1Q6PR54 Gm5864-201ENSMUST00000202263 970 ntBASIC15.72■□□□□ 0.11
Rif1Q6PR54 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Rif1Q6PR54 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Rif1Q6PR54 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Rif1Q6PR54 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Rif1Q6PR54 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Rif1Q6PR54 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Rif1Q6PR54 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC15.71■□□□□ 0.11
Rif1Q6PR54 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Rif1Q6PR54 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Rif1Q6PR54 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Rif1Q6PR54 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Rif1Q6PR54 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC15.7■□□□□ 0.1
Rif1Q6PR54 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Rif1Q6PR54 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC15.7■□□□□ 0.1
Rif1Q6PR54 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rif1Q6PR54 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rif1Q6PR54 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rif1Q6PR54 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rif1Q6PR54 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rif1Q6PR54 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rif1Q6PR54 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms