Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
Chd4Q6PDQ2 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 H2-K2-201ENSMUST00000174250 1049 ntBASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Golph3-202ENSMUST00000226517 2359 ntBASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 AC158538.1-201ENSMUST00000225870 294 ntBASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Chd4Q6PDQ2 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Chd4Q6PDQ2 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC24.66■■□□□ 1.54
Chd4Q6PDQ2 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Chd4Q6PDQ2 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 AC175538.1-201ENSMUST00000225343 1269 ntBASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Arhgef33-211ENSMUST00000225658 473 ntBASIC24.65■■□□□ 1.54
Chd4Q6PDQ2 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
Chd4Q6PDQ2 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
Chd4Q6PDQ2 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Chd4Q6PDQ2 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Chd4Q6PDQ2 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC24.64■■□□□ 1.53
Chd4Q6PDQ2 Gm20634-201ENSMUST00000090779 2956 ntBASIC24.64■■□□□ 1.53
Chd4Q6PDQ2 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
Chd4Q6PDQ2 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Chd4Q6PDQ2 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Chd4Q6PDQ2 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Chd4Q6PDQ2 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Chd4Q6PDQ2 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
Chd4Q6PDQ2 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Chd4Q6PDQ2 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
Chd4Q6PDQ2 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC24.63■■□□□ 1.53
Chd4Q6PDQ2 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Chd4Q6PDQ2 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC24.62■■□□□ 1.53
Chd4Q6PDQ2 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Chd4Q6PDQ2 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC24.62■■□□□ 1.53
Chd4Q6PDQ2 Mtag2-201ENSMUST00000058665 714 ntBASIC24.62■■□□□ 1.53
Chd4Q6PDQ2 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Chd4Q6PDQ2 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Chd4Q6PDQ2 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Chd4Q6PDQ2 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Chd4Q6PDQ2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Chd4Q6PDQ2 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Chd4Q6PDQ2 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
Chd4Q6PDQ2 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Chd4Q6PDQ2 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC24.59■■□□□ 1.53
Chd4Q6PDQ2 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Chd4Q6PDQ2 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Chd4Q6PDQ2 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Chd4Q6PDQ2 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Chd4Q6PDQ2 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
Chd4Q6PDQ2 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
Chd4Q6PDQ2 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Chd4Q6PDQ2 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Krtap5-1-202ENSMUST00000188274 742 ntBASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Gm16042-201ENSMUST00000204813 1247 ntBASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Chd4Q6PDQ2 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Chd4Q6PDQ2 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
Chd4Q6PDQ2 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
Chd4Q6PDQ2 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chd4Q6PDQ2 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chd4Q6PDQ2 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Chd4Q6PDQ2 AL672049.1-201ENSMUST00000197943 91 ntBASIC24.57■■□□□ 1.52
Chd4Q6PDQ2 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
Chd4Q6PDQ2 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Chd4Q6PDQ2 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
Chd4Q6PDQ2 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Chd4Q6PDQ2 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chd4Q6PDQ2 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms