Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ShhQ62226 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ShhQ62226 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.34■□□□□ 0.37
ShhQ62226 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ShhQ62226 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ShhQ62226 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ShhQ62226 Gm13836-201ENSMUST00000121159 501 ntBASIC17.34■□□□□ 0.37
ShhQ62226 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.34■□□□□ 0.37
ShhQ62226 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.34■□□□□ 0.37
ShhQ62226 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.34■□□□□ 0.37
ShhQ62226 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ShhQ62226 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.34■□□□□ 0.37
ShhQ62226 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ShhQ62226 Gm6365-201ENSMUST00000054711 744 ntBASIC17.34■□□□□ 0.37
ShhQ62226 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ShhQ62226 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
ShhQ62226 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ShhQ62226 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ShhQ62226 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ShhQ62226 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ShhQ62226 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
ShhQ62226 Gm13148-201ENSMUST00000118892 745 ntBASIC17.33■□□□□ 0.36
ShhQ62226 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
ShhQ62226 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ShhQ62226 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
ShhQ62226 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ShhQ62226 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ShhQ62226 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ShhQ62226 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.32■□□□□ 0.36
ShhQ62226 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ShhQ62226 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
ShhQ62226 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
ShhQ62226 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ShhQ62226 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC17.31■□□□□ 0.36
ShhQ62226 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
ShhQ62226 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ShhQ62226 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ShhQ62226 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.31■□□□□ 0.36
ShhQ62226 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ShhQ62226 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.31■□□□□ 0.36
ShhQ62226 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.31■□□□□ 0.36
ShhQ62226 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.31■□□□□ 0.36
ShhQ62226 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ShhQ62226 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
ShhQ62226 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
ShhQ62226 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ShhQ62226 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
ShhQ62226 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ShhQ62226 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
ShhQ62226 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Gm29241-201ENSMUST00000189260 1096 ntBASIC17.3■□□□□ 0.36
ShhQ62226 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.3■□□□□ 0.36
ShhQ62226 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ShhQ62226 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
ShhQ62226 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ShhQ62226 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.29■□□□□ 0.36
ShhQ62226 Gm37856-201ENSMUST00000191634 999 ntBASIC17.29■□□□□ 0.36
ShhQ62226 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.29■□□□□ 0.36
ShhQ62226 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ShhQ62226 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ShhQ62226 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.28■□□□□ 0.36
ShhQ62226 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.28■□□□□ 0.36
ShhQ62226 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
ShhQ62226 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ShhQ62226 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ShhQ62226 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
ShhQ62226 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ShhQ62226 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms