Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Trav8d-2Q5R1B6 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav8d-2Q5R1B6 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav8d-2Q5R1B6 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav8d-2Q5R1B6 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trav8d-2Q5R1B6 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Trav8d-2Q5R1B6 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav8d-2Q5R1B6 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav8d-2Q5R1B6 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
Trav8d-2Q5R1B6 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.3■□□□□ 0.52
Trav8d-2Q5R1B6 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav8d-2Q5R1B6 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trav8d-2Q5R1B6 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav8d-2Q5R1B6 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trav8d-2Q5R1B6 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trav8d-2Q5R1B6 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav8d-2Q5R1B6 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav8d-2Q5R1B6 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trav8d-2Q5R1B6 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav8d-2Q5R1B6 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav8d-2Q5R1B6 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.29■□□□□ 0.52
Trav8d-2Q5R1B6 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 Gm21814-202ENSMUST00000203277 873 ntBASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav8d-2Q5R1B6 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav8d-2Q5R1B6 Gm21362-201ENSMUST00000194272 928 ntBASIC18.27■□□□□ 0.52
Trav8d-2Q5R1B6 Gm43183-201ENSMUST00000200632 547 ntBASIC18.27■□□□□ 0.52
Trav8d-2Q5R1B6 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.27■□□□□ 0.52
Trav8d-2Q5R1B6 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Trav8d-2Q5R1B6 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav8d-2Q5R1B6 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav8d-2Q5R1B6 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trav8d-2Q5R1B6 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Trav8d-2Q5R1B6 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.27■□□□□ 0.51
Trav8d-2Q5R1B6 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
Trav8d-2Q5R1B6 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav8d-2Q5R1B6 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Gm10138-203ENSMUST00000206952 366 ntBASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav8d-2Q5R1B6 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav8d-2Q5R1B6 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms