Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Odf3b-204ENSMUST00000227834 930 ntBASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC23.91■■□□□ 1.42
Ddb1Q3U1J4 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Gm10138-203ENSMUST00000206952 366 ntBASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Dmtn-209ENSMUST00000228295 2572 ntBASIC23.9■■□□□ 1.42
Ddb1Q3U1J4 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC23.89■■□□□ 1.42
Ddb1Q3U1J4 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Ddb1Q3U1J4 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Gm18025-201ENSMUST00000221733 862 ntBASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Zfp783-201ENSMUST00000095946 670 ntBASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Ddb1Q3U1J4 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Gm27741-201ENSMUST00000185060 237 ntBASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
Ddb1Q3U1J4 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ddb1Q3U1J4 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ddb1Q3U1J4 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC23.87■■□□□ 1.41
Ddb1Q3U1J4 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Ddb1Q3U1J4 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC23.87■■□□□ 1.41
Ddb1Q3U1J4 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Gm42545-201ENSMUST00000202755 922 ntBASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Ddb1Q3U1J4 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Gm3375-201ENSMUST00000203929 796 ntBASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Timm23-208ENSMUST00000226683 750 ntBASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ddb1Q3U1J4 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ddb1Q3U1J4 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Gm15375-201ENSMUST00000119510 849 ntBASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Otx2os1-204ENSMUST00000227221 751 ntBASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ddb1Q3U1J4 Gm7712-202ENSMUST00000222331 1510 ntBASIC23.83■■□□□ 1.41
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms