Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Hmgb1P63158 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC20.51■□□□□ 0.87
Hmgb1P63158 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.51■□□□□ 0.87
Hmgb1P63158 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Hmgb1P63158 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Hmgb1P63158 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Hmgb1P63158 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
Hmgb1P63158 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb1P63158 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb1P63158 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.5■□□□□ 0.87
Hmgb1P63158 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb1P63158 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb1P63158 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Hmgb1P63158 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb1P63158 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb1P63158 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hmgb1P63158 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.5■□□□□ 0.87
Hmgb1P63158 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.49■□□□□ 0.87
Hmgb1P63158 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Gm43060-201ENSMUST00000200621 289 ntBASIC20.49■□□□□ 0.87
Hmgb1P63158 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.49■□□□□ 0.87
Hmgb1P63158 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hmgb1P63158 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Hmgb1P63158 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hmgb1P63158 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb1P63158 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb1P63158 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Hmgb1P63158 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Hmgb1P63158 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.47■□□□□ 0.87
Hmgb1P63158 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb1P63158 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hmgb1P63158 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Hmgb1P63158 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.46■□□□□ 0.87
Hmgb1P63158 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hmgb1P63158 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
Hmgb1P63158 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.46■□□□□ 0.87
Hmgb1P63158 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Hmgb1P63158 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.46■□□□□ 0.87
Hmgb1P63158 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.46■□□□□ 0.87
Hmgb1P63158 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hmgb1P63158 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.46■□□□□ 0.87
Hmgb1P63158 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Hmgb1P63158 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
Hmgb1P63158 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC20.45■□□□□ 0.86
Hmgb1P63158 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.45■□□□□ 0.86
Hmgb1P63158 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.45■□□□□ 0.86
Hmgb1P63158 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Hmgb1P63158 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Hmgb1P63158 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb1P63158 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Hmgb1P63158 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb1P63158 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.44■□□□□ 0.86
Hmgb1P63158 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.44■□□□□ 0.86
Hmgb1P63158 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb1P63158 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb1P63158 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb1P63158 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Hmgb1P63158 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb1P63158 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hmgb1P63158 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms