Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RaraP11416 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RaraP11416 Gm26833-201ENSMUST00000180899 440 ntBASIC20.2■□□□□ 0.82
RaraP11416 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.2■□□□□ 0.82
RaraP11416 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.2■□□□□ 0.82
RaraP11416 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RaraP11416 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RaraP11416 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RaraP11416 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RaraP11416 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.2■□□□□ 0.82
RaraP11416 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RaraP11416 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RaraP11416 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.19■□□□□ 0.82
RaraP11416 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.19■□□□□ 0.82
RaraP11416 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
RaraP11416 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.19■□□□□ 0.82
RaraP11416 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RaraP11416 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RaraP11416 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RaraP11416 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.18■□□□□ 0.82
RaraP11416 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RaraP11416 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RaraP11416 Gm43017-201ENSMUST00000198296 752 ntBASIC20.18■□□□□ 0.82
RaraP11416 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RaraP11416 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RaraP11416 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RaraP11416 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RaraP11416 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RaraP11416 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
RaraP11416 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.17■□□□□ 0.82
RaraP11416 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 Gm38205-201ENSMUST00000192243 258 ntBASIC20.17■□□□□ 0.82
RaraP11416 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.17■□□□□ 0.82
RaraP11416 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.17■□□□□ 0.82
RaraP11416 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.17■□□□□ 0.82
RaraP11416 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RaraP11416 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.17■□□□□ 0.82
RaraP11416 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RaraP11416 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.16■□□□□ 0.82
RaraP11416 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RaraP11416 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.16■□□□□ 0.82
RaraP11416 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RaraP11416 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RaraP11416 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RaraP11416 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RaraP11416 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
RaraP11416 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RaraP11416 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RaraP11416 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RaraP11416 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.15■□□□□ 0.82
RaraP11416 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RaraP11416 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RaraP11416 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
RaraP11416 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RaraP11416 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.13■□□□□ 0.81
RaraP11416 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RaraP11416 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RaraP11416 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.13■□□□□ 0.81
RaraP11416 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RaraP11416 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
RaraP11416 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RaraP11416 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RaraP11416 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RaraP11416 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
RaraP11416 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RaraP11416 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RaraP11416 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
RaraP11416 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RaraP11416 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RaraP11416 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.12■□□□□ 0.81
RaraP11416 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RaraP11416 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms