Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lire1P11260 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lire1P11260 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lire1P11260 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Lire1P11260 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC17.56■□□□□ 0.4
Lire1P11260 Gm37179-201ENSMUST00000194862 823 ntBASIC17.56■□□□□ 0.4
Lire1P11260 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Lire1P11260 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC17.56■□□□□ 0.4
Lire1P11260 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Lire1P11260 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lire1P11260 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC17.56■□□□□ 0.4
Lire1P11260 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.56■□□□□ 0.4
Lire1P11260 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Lire1P11260 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lire1P11260 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lire1P11260 AC152827.1-201ENSMUST00000221143 2189 ntBASIC17.55■□□□□ 0.4
Lire1P11260 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lire1P11260 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.55■□□□□ 0.4
Lire1P11260 Gm18671-201ENSMUST00000214826 683 ntBASIC17.55■□□□□ 0.4
Lire1P11260 Gm40848-201ENSMUST00000221998 324 ntBASIC17.55■□□□□ 0.4
Lire1P11260 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lire1P11260 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lire1P11260 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Lire1P11260 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Lire1P11260 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.54■□□□□ 0.4
Lire1P11260 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Lire1P11260 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Lire1P11260 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.54■□□□□ 0.4
Lire1P11260 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
Lire1P11260 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Lire1P11260 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lire1P11260 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.54■□□□□ 0.4
Lire1P11260 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Lire1P11260 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Lire1P11260 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Lire1P11260 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.53■□□□□ 0.4
Lire1P11260 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lire1P11260 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.53■□□□□ 0.4
Lire1P11260 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.52■□□□□ 0.4
Lire1P11260 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lire1P11260 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lire1P11260 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Lire1P11260 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lire1P11260 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lire1P11260 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Lire1P11260 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Lire1P11260 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lire1P11260 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Lire1P11260 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Lire1P11260 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Lire1P11260 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
Lire1P11260 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.51■□□□□ 0.39
Lire1P11260 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lire1P11260 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Lire1P11260 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC17.51■□□□□ 0.39
Lire1P11260 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC17.51■□□□□ 0.39
Lire1P11260 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lire1P11260 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Lire1P11260 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Lire1P11260 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lire1P11260 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lire1P11260 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Lire1P11260 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lire1P11260 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lire1P11260 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Lire1P11260 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms