Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Vti1aO89116 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Vti1aO89116 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vti1aO89116 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Vti1aO89116 Iqck-206ENSMUST00000208658 2891 ntBASIC20.09■□□□□ 0.81
Vti1aO89116 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.09■□□□□ 0.81
Vti1aO89116 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
Vti1aO89116 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.09■□□□□ 0.81
Vti1aO89116 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.09■□□□□ 0.81
Vti1aO89116 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
Vti1aO89116 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vti1aO89116 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Vti1aO89116 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Vti1aO89116 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vti1aO89116 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vti1aO89116 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vti1aO89116 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.08■□□□□ 0.81
Vti1aO89116 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Vti1aO89116 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.08■□□□□ 0.81
Vti1aO89116 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Vti1aO89116 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vti1aO89116 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Vti1aO89116 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vti1aO89116 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Vti1aO89116 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.07■□□□□ 0.8
Vti1aO89116 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.07■□□□□ 0.8
Vti1aO89116 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
Vti1aO89116 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.07■□□□□ 0.8
Vti1aO89116 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.07■□□□□ 0.8
Vti1aO89116 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vti1aO89116 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Vti1aO89116 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.06■□□□□ 0.8
Vti1aO89116 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.06■□□□□ 0.8
Vti1aO89116 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Vti1aO89116 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.06■□□□□ 0.8
Vti1aO89116 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vti1aO89116 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Vti1aO89116 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.05■□□□□ 0.8
Vti1aO89116 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.05■□□□□ 0.8
Vti1aO89116 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.05■□□□□ 0.8
Vti1aO89116 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 Gm10252-201ENSMUST00000209541 832 ntBASIC20.05■□□□□ 0.8
Vti1aO89116 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.05■□□□□ 0.8
Vti1aO89116 Gm10812-201ENSMUST00000099864 546 ntBASIC20.05■□□□□ 0.8
Vti1aO89116 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
Vti1aO89116 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vti1aO89116 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 Gm37856-201ENSMUST00000191634 999 ntBASIC20.04■□□□□ 0.8
Vti1aO89116 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.04■□□□□ 0.8
Vti1aO89116 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vti1aO89116 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms