Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lmx1bO88609 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 AC131586.2-201ENSMUST00000228370 1512 ntBASIC16.88■□□□□ 0.29
Lmx1bO88609 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Lmx1bO88609 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Lmx1bO88609 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Lmx1bO88609 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
Lmx1bO88609 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Lmx1bO88609 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lmx1bO88609 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
Lmx1bO88609 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Lmx1bO88609 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC16.87■□□□□ 0.29
Lmx1bO88609 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC16.87■□□□□ 0.29
Lmx1bO88609 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Lmx1bO88609 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lmx1bO88609 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Lmx1bO88609 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Lmx1bO88609 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC16.86■□□□□ 0.29
Lmx1bO88609 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Lmx1bO88609 Gm26971-201ENSMUST00000182423 1072 ntBASIC16.86■□□□□ 0.29
Lmx1bO88609 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
Lmx1bO88609 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Lmx1bO88609 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lmx1bO88609 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC16.85■□□□□ 0.29
Lmx1bO88609 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC16.85■□□□□ 0.29
Lmx1bO88609 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
Lmx1bO88609 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC16.85■□□□□ 0.29
Lmx1bO88609 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lmx1bO88609 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lmx1bO88609 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Lmx1bO88609 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Lmx1bO88609 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Lmx1bO88609 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC16.84■□□□□ 0.29
Lmx1bO88609 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lmx1bO88609 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Lmx1bO88609 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC16.84■□□□□ 0.29
Lmx1bO88609 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Lmx1bO88609 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lmx1bO88609 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lmx1bO88609 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lmx1bO88609 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC16.83■□□□□ 0.29
Lmx1bO88609 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
Lmx1bO88609 Gm12527-201ENSMUST00000117967 564 ntBASIC16.83■□□□□ 0.28
Lmx1bO88609 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Lmx1bO88609 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.28
Lmx1bO88609 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Lmx1bO88609 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
Lmx1bO88609 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Lmx1bO88609 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Lmx1bO88609 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC16.83■□□□□ 0.28
Lmx1bO88609 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lmx1bO88609 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lmx1bO88609 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lmx1bO88609 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lmx1bO88609 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Lmx1bO88609 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Lmx1bO88609 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lmx1bO88609 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lmx1bO88609 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms