Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.05■□□□□ 0.32
Col5a1O88207 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.05■□□□□ 0.32
Col5a1O88207 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Col5a1O88207 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col5a1O88207 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.05■□□□□ 0.32
Col5a1O88207 Gm43672-201ENSMUST00000199072 1731 ntBASIC17.05■□□□□ 0.32
Col5a1O88207 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.05■□□□□ 0.32
Col5a1O88207 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Col5a1O88207 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.04■□□□□ 0.32
Col5a1O88207 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Gm18666-201ENSMUST00000190039 958 ntBASIC17.04■□□□□ 0.32
Col5a1O88207 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.04■□□□□ 0.32
Col5a1O88207 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Col5a1O88207 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Col5a1O88207 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col5a1O88207 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC17.04■□□□□ 0.32
Col5a1O88207 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC17.03■□□□□ 0.32
Col5a1O88207 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.03■□□□□ 0.32
Col5a1O88207 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC17.03■□□□□ 0.32
Col5a1O88207 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col5a1O88207 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col5a1O88207 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col5a1O88207 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col5a1O88207 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col5a1O88207 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Col5a1O88207 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col5a1O88207 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Col5a1O88207 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col5a1O88207 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.02■□□□□ 0.32
Col5a1O88207 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Col5a1O88207 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
Col5a1O88207 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col5a1O88207 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col5a1O88207 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col5a1O88207 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col5a1O88207 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.31
Col5a1O88207 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col5a1O88207 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col5a1O88207 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col5a1O88207 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Col5a1O88207 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col5a1O88207 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.01■□□□□ 0.31
Col5a1O88207 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col5a1O88207 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Col5a1O88207 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col5a1O88207 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col5a1O88207 Gm2399-201ENSMUST00000104944 225 ntBASIC17■□□□□ 0.31
Col5a1O88207 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Col5a1O88207 Gm6728-201ENSMUST00000178117 1065 ntBASIC17■□□□□ 0.31
Col5a1O88207 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17■□□□□ 0.31
Col5a1O88207 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Gm15378-201ENSMUST00000121894 207 ntBASIC17■□□□□ 0.31
Col5a1O88207 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17■□□□□ 0.31
Col5a1O88207 Gm10517-202ENSMUST00000192970 758 ntBASIC17■□□□□ 0.31
Col5a1O88207 Gm44549-201ENSMUST00000208351 577 ntBASIC17■□□□□ 0.31
Col5a1O88207 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Gm5417-201ENSMUST00000079706 384 ntBASIC17■□□□□ 0.31
Col5a1O88207 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Col5a1O88207 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Col5a1O88207 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col5a1O88207 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col5a1O88207 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Col5a1O88207 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col5a1O88207 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.99■□□□□ 0.31
Col5a1O88207 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col5a1O88207 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col5a1O88207 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.99■□□□□ 0.31
Col5a1O88207 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC16.99■□□□□ 0.31
Col5a1O88207 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Col5a1O88207 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC16.99■□□□□ 0.31
Col5a1O88207 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC16.98■□□□□ 0.31
Col5a1O88207 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col5a1O88207 Gm18688-201ENSMUST00000204695 1859 ntBASIC16.98■□□□□ 0.31
Col5a1O88207 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col5a1O88207 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col5a1O88207 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col5a1O88207 AC124603.1-201ENSMUST00000223843 308 ntBASIC16.98■□□□□ 0.31
Col5a1O88207 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col5a1O88207 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col5a1O88207 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col5a1O88207 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col5a1O88207 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col5a1O88207 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col5a1O88207 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms