Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC15.52■□□□□ 0.08
Hmgb3O54879 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Hmgb3O54879 Gm45640-201ENSMUST00000210665 1896 ntBASIC15.52■□□□□ 0.07
Hmgb3O54879 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Hmgb3O54879 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Hmgb3O54879 Dmtn-210ENSMUST00000228824 2377 ntBASIC15.51■□□□□ 0.07
Hmgb3O54879 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC15.51■□□□□ 0.07
Hmgb3O54879 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb3O54879 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC15.5■□□□□ 0.07
Hmgb3O54879 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Gm13238-201ENSMUST00000117655 780 ntBASIC15.5■□□□□ 0.07
Hmgb3O54879 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC15.5■□□□□ 0.07
Hmgb3O54879 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Gm45606-201ENSMUST00000209836 2795 ntBASIC15.5■□□□□ 0.07
Hmgb3O54879 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb3O54879 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC15.49■□□□□ 0.07
Hmgb3O54879 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC15.49■□□□□ 0.07
Hmgb3O54879 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Hmgb3O54879 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Gm42939-201ENSMUST00000197514 2205 ntBASIC15.49■□□□□ 0.07
Hmgb3O54879 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb3O54879 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Hmgb3O54879 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC15.48■□□□□ 0.07
Hmgb3O54879 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC15.48■□□□□ 0.07
Hmgb3O54879 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Hmgb3O54879 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb3O54879 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC15.47■□□□□ 0.07
Hmgb3O54879 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC15.47■□□□□ 0.07
Hmgb3O54879 Mir6538-201ENSMUST00000183713 110 ntBASIC15.47■□□□□ 0.07
Hmgb3O54879 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC15.47■□□□□ 0.07
Hmgb3O54879 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC15.47■□□□□ 0.07
Hmgb3O54879 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Hmgb3O54879 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC15.47■□□□□ 0.07
Hmgb3O54879 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Hmgb3O54879 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Hmgb3O54879 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms