Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sdc4O35988 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.25■□□□□ 0.67
Sdc4O35988 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sdc4O35988 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sdc4O35988 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.25■□□□□ 0.67
Sdc4O35988 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Sdc4O35988 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sdc4O35988 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Sdc4O35988 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sdc4O35988 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.24■□□□□ 0.67
Sdc4O35988 Gm12527-201ENSMUST00000117967 564 ntBASIC19.24■□□□□ 0.67
Sdc4O35988 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sdc4O35988 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Sdc4O35988 Gm20049-201ENSMUST00000219950 730 ntBASIC19.24■□□□□ 0.67
Sdc4O35988 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sdc4O35988 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sdc4O35988 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.24■□□□□ 0.67
Sdc4O35988 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.23■□□□□ 0.67
Sdc4O35988 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sdc4O35988 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.23■□□□□ 0.67
Sdc4O35988 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Sdc4O35988 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.23■□□□□ 0.67
Sdc4O35988 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Sdc4O35988 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC19.23■□□□□ 0.67
Sdc4O35988 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Sdc4O35988 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sdc4O35988 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Sdc4O35988 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.23■□□□□ 0.67
Sdc4O35988 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.22■□□□□ 0.67
Sdc4O35988 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sdc4O35988 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sdc4O35988 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sdc4O35988 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Sdc4O35988 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Sdc4O35988 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Sdc4O35988 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Sdc4O35988 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sdc4O35988 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC19.22■□□□□ 0.67
Sdc4O35988 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sdc4O35988 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sdc4O35988 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Sdc4O35988 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Sdc4O35988 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.21■□□□□ 0.67
Sdc4O35988 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Sdc4O35988 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Sdc4O35988 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sdc4O35988 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Sdc4O35988 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sdc4O35988 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sdc4O35988 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.2■□□□□ 0.66
Sdc4O35988 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.2■□□□□ 0.66
Sdc4O35988 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sdc4O35988 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sdc4O35988 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sdc4O35988 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sdc4O35988 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.2■□□□□ 0.66
Sdc4O35988 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sdc4O35988 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Sdc4O35988 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Sdc4O35988 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.19■□□□□ 0.66
Sdc4O35988 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.19■□□□□ 0.66
Sdc4O35988 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sdc4O35988 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Sdc4O35988 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Sdc4O35988 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Sdc4O35988 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.18■□□□□ 0.66
Sdc4O35988 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Sdc4O35988 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Sdc4O35988 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Sdc4O35988 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Sdc4O35988 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Sdc4O35988 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.18■□□□□ 0.66
Sdc4O35988 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Sdc4O35988 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Sdc4O35988 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Sdc4O35988 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Sdc4O35988 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Sdc4O35988 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sdc4O35988 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Sdc4O35988 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.17■□□□□ 0.66
Sdc4O35988 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Sdc4O35988 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms