Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
Nr1i3O35627 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nr1i3O35627 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Nr1i3O35627 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nr1i3O35627 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.09■□□□□ 0.81
Nr1i3O35627 Gm43060-201ENSMUST00000200621 289 ntBASIC20.09■□□□□ 0.81
Nr1i3O35627 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.09■□□□□ 0.81
Nr1i3O35627 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC20.09■□□□□ 0.81
Nr1i3O35627 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Nr1i3O35627 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Nr1i3O35627 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Nr1i3O35627 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.09■□□□□ 0.81
Nr1i3O35627 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Nr1i3O35627 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1i3O35627 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.08■□□□□ 0.81
Nr1i3O35627 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1i3O35627 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1i3O35627 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.08■□□□□ 0.81
Nr1i3O35627 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Nr1i3O35627 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Nr1i3O35627 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nr1i3O35627 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nr1i3O35627 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nr1i3O35627 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Nr1i3O35627 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1i3O35627 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1i3O35627 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1i3O35627 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.07■□□□□ 0.8
Nr1i3O35627 Gm15039-201ENSMUST00000118914 875 ntBASIC20.07■□□□□ 0.8
Nr1i3O35627 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC20.07■□□□□ 0.8
Nr1i3O35627 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1i3O35627 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.07■□□□□ 0.8
Nr1i3O35627 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1i3O35627 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.07■□□□□ 0.8
Nr1i3O35627 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1i3O35627 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1i3O35627 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nr1i3O35627 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Nr1i3O35627 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Nr1i3O35627 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1i3O35627 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Nr1i3O35627 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1i3O35627 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.06■□□□□ 0.8
Nr1i3O35627 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Nr1i3O35627 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1i3O35627 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1i3O35627 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1i3O35627 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Nr1i3O35627 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.06■□□□□ 0.8
Nr1i3O35627 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Nr1i3O35627 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.06■□□□□ 0.8
Nr1i3O35627 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.06■□□□□ 0.8
Nr1i3O35627 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1i3O35627 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Nr1i3O35627 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1i3O35627 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Nr1i3O35627 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Nr1i3O35627 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nr1i3O35627 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nr1i3O35627 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nr1i3O35627 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Nr1i3O35627 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.05■□□□□ 0.8
Nr1i3O35627 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nr1i3O35627 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.05■□□□□ 0.8
Nr1i3O35627 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.05■□□□□ 0.8
Nr1i3O35627 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nr1i3O35627 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nr1i3O35627 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.05■□□□□ 0.8
Nr1i3O35627 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nr1i3O35627 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.04■□□□□ 0.8
Nr1i3O35627 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.04■□□□□ 0.8
Nr1i3O35627 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC20.04■□□□□ 0.8
Nr1i3O35627 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Grk6-206ENSMUST00000224995 2971 ntBASIC20.04■□□□□ 0.8
Nr1i3O35627 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.04■□□□□ 0.8
Nr1i3O35627 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.04■□□□□ 0.8
Nr1i3O35627 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nr1i3O35627 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1i3O35627 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1i3O35627 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1i3O35627 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1i3O35627 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1i3O35627 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.03■□□□□ 0.8
Nr1i3O35627 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.03■□□□□ 0.8
Nr1i3O35627 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1i3O35627 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Nr1i3O35627 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms