Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Spcs1-204ENSMUST00000226782 949 ntBASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdh1F7BJK1 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC16.77■□□□□ 0.28
Pcdh1F7BJK1 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Pcdh1F7BJK1 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Pcdh1F7BJK1 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Pcdh1F7BJK1 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Pcdh1F7BJK1 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Pcdh1F7BJK1 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Pcdh1F7BJK1 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Gm13241-201ENSMUST00000094493 780 ntBASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Pcdh1F7BJK1 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Gm5576-201ENSMUST00000075809 1236 ntBASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Gm45906-201ENSMUST00000208911 1430 ntBASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Gm37811-201ENSMUST00000192416 2601 ntBASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Gm19439-201ENSMUST00000198195 2273 ntBASIC16.75■□□□□ 0.27
Pcdh1F7BJK1 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Pcdh1F7BJK1 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Pcdh1F7BJK1 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Pcdh1F7BJK1 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Pcdh1F7BJK1 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Pcdh1F7BJK1 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Pcdh1F7BJK1 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Pcdh1F7BJK1 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Pcdh1F7BJK1 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Pcdh1F7BJK1 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC16.73■□□□□ 0.27
Pcdh1F7BJK1 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 92.7 ms