Protein–RNA interactions for Protein: D3YZU1

Shank1, SH3 and multiple ankyrin repeat domains protein 1, mousemouse

Predictions only

Length 2,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shank1D3YZU1 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shank1D3YZU1 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.72■□□□□ 0.27
Shank1D3YZU1 Gm5417-201ENSMUST00000079706 384 ntBASIC16.72■□□□□ 0.27
Shank1D3YZU1 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
Shank1D3YZU1 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shank1D3YZU1 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
Shank1D3YZU1 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Shank1D3YZU1 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.71■□□□□ 0.27
Shank1D3YZU1 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shank1D3YZU1 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Shank1D3YZU1 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Shank1D3YZU1 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Gm32699-201ENSMUST00000221728 1988 ntBASIC16.7■□□□□ 0.26
Shank1D3YZU1 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shank1D3YZU1 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Shank1D3YZU1 Gm20100-201ENSMUST00000209418 2272 ntBASIC16.69■□□□□ 0.26
Shank1D3YZU1 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC16.68■□□□□ 0.26
Shank1D3YZU1 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Shank1D3YZU1 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC16.67■□□□□ 0.26
Shank1D3YZU1 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC16.67■□□□□ 0.26
Shank1D3YZU1 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.67■□□□□ 0.26
Shank1D3YZU1 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Shank1D3YZU1 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Shank1D3YZU1 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms