Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
Col6a4A2AX52 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a4A2AX52 Gm5417-201ENSMUST00000079706 384 ntBASIC15.74■□□□□ 0.11
Col6a4A2AX52 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a4A2AX52 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC15.74■□□□□ 0.11
Col6a4A2AX52 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
Col6a4A2AX52 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a4A2AX52 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col6a4A2AX52 Gm15043-201ENSMUST00000118843 1543 ntBASIC15.74■□□□□ 0.11
Col6a4A2AX52 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC15.74■□□□□ 0.11
Col6a4A2AX52 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC15.74■□□□□ 0.11
Col6a4A2AX52 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC15.73■□□□□ 0.11
Col6a4A2AX52 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Gm18666-201ENSMUST00000190039 958 ntBASIC15.73■□□□□ 0.11
Col6a4A2AX52 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Gm8668-201ENSMUST00000120559 1447 ntBASIC15.73■□□□□ 0.11
Col6a4A2AX52 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC15.73■□□□□ 0.11
Col6a4A2AX52 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC15.72■□□□□ 0.11
Col6a4A2AX52 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col6a4A2AX52 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a4A2AX52 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC15.71■□□□□ 0.11
Col6a4A2AX52 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Col6a4A2AX52 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a4A2AX52 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a4A2AX52 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col6a4A2AX52 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col6a4A2AX52 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Col6a4A2AX52 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC15.71■□□□□ 0.1
Col6a4A2AX52 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col6a4A2AX52 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
Col6a4A2AX52 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col6a4A2AX52 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
Col6a4A2AX52 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col6a4A2AX52 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Gm43672-201ENSMUST00000199072 1731 ntBASIC15.69■□□□□ 0.1
Col6a4A2AX52 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Col6a4A2AX52 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Arhgef4-208ENSMUST00000211073 171 ntBASIC15.68■□□□□ 0.1
Col6a4A2AX52 AC140264.2-202ENSMUST00000218746 817 ntBASIC15.68■□□□□ 0.1
Col6a4A2AX52 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms