Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Pcdhgb8A0A140LI48 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Pcdhgb8A0A140LI48 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 BC021767-201ENSMUST00000126387 1716 ntBASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Pcdhgb8A0A140LI48 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Pcdhgb8A0A140LI48 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Pcdhgb8A0A140LI48 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Pcdhgb8A0A140LI48 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms