Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav1A0A075B5Z4 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav1A0A075B5Z4 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Gm13146-201ENSMUST00000118508 780 ntBASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav1A0A075B5Z4 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav1A0A075B5Z4 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav1A0A075B5Z4 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav1A0A075B5Z4 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav1A0A075B5Z4 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav1A0A075B5Z4 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav1A0A075B5Z4 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav1A0A075B5Z4 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.35■□□□□ 0.37
Trav1A0A075B5Z4 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav1A0A075B5Z4 AC123834.2-201ENSMUST00000224038 2340 ntBASIC17.35■□□□□ 0.37
Trav1A0A075B5Z4 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav1A0A075B5Z4 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms