Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Sp1-202ENSMUST00000163709 3134 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Clec1a-201ENSMUST00000037481 3123 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Col18a1P39061 Zfyve9-201ENSMUST00000042185 2170 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Lpin3-203ENSMUST00000109456 3470 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Sp3-201ENSMUST00000066003 3808 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Col18a1P39061 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Elovl4-201ENSMUST00000034796 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Gm29398-201ENSMUST00000186355 1491 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 9230112E08Rik-202ENSMUST00000189441 3352 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Nrap-202ENSMUST00000073536 5501 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC10.37□□□□□ -0.75
Col18a1P39061 Phf19-201ENSMUST00000028232 3741 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Gm6327-201ENSMUST00000171185 1335 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Gm18957-201ENSMUST00000197623 1813 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Cyp17a1-201ENSMUST00000026012 1815 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Fam19a3-201ENSMUST00000139783 4316 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Dhdh-201ENSMUST00000011526 5323 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Phf21a-207ENSMUST00000111293 3900 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Col18a1P39061 Gpr83-202ENSMUST00000115624 2937 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Olfr1532-ps1-203ENSMUST00000215949 2439 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Col18a1P39061 Atxn7l1-213ENSMUST00000154742 3548 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Ndrg3-201ENSMUST00000069600 2612 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Rnase4-201ENSMUST00000022428 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Gm22781-201ENSMUST00000104083 137 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Gm11799-201ENSMUST00000116110 460 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Gm25782-201ENSMUST00000122526 289 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Mir1983-201ENSMUST00000157523 132 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Mir5617-201ENSMUST00000176786 57 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Gm16701-202ENSMUST00000180995 934 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Gm29201-201ENSMUST00000189120 431 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Gm28548-201ENSMUST00000191599 409 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Gm43116-201ENSMUST00000199789 195 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 AC122251.1-201ENSMUST00000227717 639 ntBASIC10.37□□□□□ -0.75
Col18a1P39061 Pigr-201ENSMUST00000027675 3849 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 Slxl1-201ENSMUST00000088740 730 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Col18a1P39061 4930548H24Rik-201ENSMUST00000031020 1641 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Olfr923-203ENSMUST00000213619 2846 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 Fbxo38-201ENSMUST00000048688 4388 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Asb17-201ENSMUST00000044089 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Nat10-201ENSMUST00000028608 3879 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm44093-201ENSMUST00000204381 1802 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Zfat-204ENSMUST00000162054 4386 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 Limch1-203ENSMUST00000117601 3157 ntTSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 AC160340.1-201ENSMUST00000222952 3964 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Ahrr-201ENSMUST00000022059 4754 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Trim36-201ENSMUST00000037011 4544 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Rbfox2-203ENSMUST00000166610 6573 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm38359-201ENSMUST00000191884 2225 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Paics-202ENSMUST00000117536 1862 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 A630072L19Rik-202ENSMUST00000221309 1519 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Ufl1-202ENSMUST00000102994 4316 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Antxrl-201ENSMUST00000058725 2532 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm31152-201ENSMUST00000210319 2171 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm15913-201ENSMUST00000118492 331 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Gm12451-201ENSMUST00000121636 633 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Gm14155-201ENSMUST00000127230 587 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm16984-201ENSMUST00000130003 982 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm7613-201ENSMUST00000139070 487 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Gm22530-201ENSMUST00000158820 118 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Gm16006-201ENSMUST00000160938 566 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm27042-201ENSMUST00000181109 1097 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Mocs2-217ENSMUST00000184781 1250 ntTSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm27231-201ENSMUST00000185191 551 ntTSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm28885-201ENSMUST00000185615 563 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Ptma-204ENSMUST00000188533 593 ntTSL 3 BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm37620-201ENSMUST00000192910 501 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 4930474N09Rik-201ENSMUST00000223511 1176 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 AC164295.1-201ENSMUST00000224861 186 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 CT009556.4-201ENSMUST00000227092 200 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Gm6455-201ENSMUST00000095015 1072 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Bbs9-201ENSMUST00000039798 3382 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Ube2f-203ENSMUST00000171165 5654 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Ndp-201ENSMUST00000040134 1939 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Lss-201ENSMUST00000048678 4667 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Mmgt1-201ENSMUST00000059899 4234 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm5361-201ENSMUST00000211041 1498 ntBASIC10.36□□□□□ -0.75
Col18a1P39061 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Fam60a-211ENSMUST00000204435 2785 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 Lonp2-202ENSMUST00000121673 1550 ntTSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 Nsun7-201ENSMUST00000031109 2345 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 Exoc1-203ENSMUST00000113493 3371 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm3512-202ENSMUST00000172431 1861 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Col18a1P39061 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Col18a1P39061 Gm10101-202ENSMUST00000181311 2919 ntBASIC10.35□□□□□ -0.75
Col18a1P39061 Wdr48-205ENSMUST00000215307 3776 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Col18a1P39061 Dgcr2-202ENSMUST00000066127 3790 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Col18a1P39061 Pdzd9-201ENSMUST00000033178 2180 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col18a1P39061 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col18a1P39061 I830077J02Rik-201ENSMUST00000098758 2599 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Col18a1P39061 Lin7a-202ENSMUST00000105280 1634 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Col18a1P39061 L1cam-201ENSMUST00000066576 4116 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Col18a1P39061 Ube4a-204ENSMUST00000138559 3374 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Col18a1P39061 Nt5c1b-217ENSMUST00000219826 2023 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Col18a1P39061 2010310C07Rik-201ENSMUST00000187172 2226 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Col18a1P39061 Gm2163-201ENSMUST00000179734 2723 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms