Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Lmx1a-201ENSMUST00000028003 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cux1P53564 Ttll7-205ENSMUST00000170055 6075 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Cux1P53564 Egflam-202ENSMUST00000096494 4391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Ankrd55-201ENSMUST00000022275 2412 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Adcy8-202ENSMUST00000228014 6900 ntAPPRIS ALT2 BASIC12.19□□□□□ -0.46
Cux1P53564 Kcnma1-203ENSMUST00000100831 3261 ntTSL 5 BASIC12.19□□□□□ -0.46
Cux1P53564 Ncam1-202ENSMUST00000166811 3088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 G3bp2-201ENSMUST00000113127 4182 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Ttc21a-201ENSMUST00000035100 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Ndrg3-202ENSMUST00000072298 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Gm10069-201ENSMUST00000144745 3694 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Cks1brt-202ENSMUST00000211617 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Olfr1357-201ENSMUST00000095473 1826 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Cux1P53564 Gm13414-201ENSMUST00000117516 727 ntBASIC12.19□□□□□ -0.46
Cux1P53564 Gm13495-201ENSMUST00000121156 537 ntBASIC12.19□□□□□ -0.46
Cux1P53564 Il1rn-205ENSMUST00000142093 321 ntTSL 3 BASIC12.19□□□□□ -0.46
Cux1P53564 Gm2976-201ENSMUST00000160362 513 ntBASIC12.19□□□□□ -0.46
Cux1P53564 Gm42424-201ENSMUST00000198319 376 ntBASIC12.19□□□□□ -0.46
Cux1P53564 Gm43558-201ENSMUST00000200155 210 ntBASIC12.19□□□□□ -0.46
Cux1P53564 Gm7394-201ENSMUST00000209138 1032 ntBASIC12.19□□□□□ -0.46
Cux1P53564 Gm45463-202ENSMUST00000210735 1188 ntTSL 5 BASIC12.19□□□□□ -0.46
Cux1P53564 Gnb1-ps3-201ENSMUST00000212191 950 ntBASIC12.19□□□□□ -0.46
Cux1P53564 Tbca-204ENSMUST00000220825 497 ntTSL 3 BASIC12.19□□□□□ -0.46
Cux1P53564 AC162934.2-201ENSMUST00000221451 249 ntBASIC12.19□□□□□ -0.46
Cux1P53564 AC117949.1-201ENSMUST00000225547 419 ntBASIC12.19□□□□□ -0.46
Cux1P53564 AC140451.1-201ENSMUST00000227984 737 ntBASIC12.19□□□□□ -0.46
Cux1P53564 Gm13304-201ENSMUST00000098123 837 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Aen-203ENSMUST00000107425 4956 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Srgap1-202ENSMUST00000081688 7787 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Cux1P53564 Ctps2-201ENSMUST00000033727 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Dppa2-201ENSMUST00000097175 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Smarca1-202ENSMUST00000088973 4798 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Zmym1-203ENSMUST00000106102 3852 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Gm6567-201ENSMUST00000205529 2095 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cux1P53564 Elp3-203ENSMUST00000225355 2771 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Cux1P53564 Usp28-203ENSMUST00000213874 4109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Cdk20-201ENSMUST00000021939 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Gm15739-201ENSMUST00000118049 872 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Gm11928-201ENSMUST00000119323 437 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Gm15129-201ENSMUST00000119673 279 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Skint8-205ENSMUST00000165046 1280 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Gm28142-201ENSMUST00000186899 698 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Gm9127-201ENSMUST00000188041 985 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Gm20917-202ENSMUST00000188706 1224 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Gm29562-201ENSMUST00000190113 904 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Gm6522-201ENSMUST00000197160 1203 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Gm18980-201ENSMUST00000199098 1079 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Gm34701-201ENSMUST00000204213 849 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Gm6681-201ENSMUST00000205215 607 ntBASIC12.18□□□□□ -0.46
Cux1P53564 Gm6145-202ENSMUST00000210292 787 ntTSL 5 BASIC12.18□□□□□ -0.46
Cux1P53564 AC122428.4-201ENSMUST00000213494 589 ntTSL 3 BASIC12.18□□□□□ -0.46
Cux1P53564 AC167222.1-201ENSMUST00000219379 660 ntTSL 2 BASIC12.18□□□□□ -0.46
Cux1P53564 3300002A11Rik-201ENSMUST00000046994 654 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Ndufa7-201ENSMUST00000048249 508 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Ino80c-201ENSMUST00000055012 909 ntTSL 5 BASIC12.18□□□□□ -0.46
Cux1P53564 Cntrob-201ENSMUST00000092973 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Fam217a-201ENSMUST00000021851 2402 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Shc4-201ENSMUST00000042246 4059 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Gm28945-201ENSMUST00000187780 2165 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Gm29622-201ENSMUST00000190914 2165 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Ston1-207ENSMUST00000163588 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Cdh23-205ENSMUST00000105464 11090 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Cux1P53564 Gabra5-203ENSMUST00000206734 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 G3bp1-201ENSMUST00000018727 6703 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Cux1P53564 Gucy1b3-204ENSMUST00000193597 3171 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Cse1l-201ENSMUST00000002790 3641 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Wdr27-206ENSMUST00000228330 2759 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Cux1P53564 Arhgap6-205ENSMUST00000112131 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Rps20-203ENSMUST00000138502 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Zdhhc22-202ENSMUST00000222543 3462 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
Cux1P53564 Sec16b-201ENSMUST00000027881 4414 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cux1P53564 Med12l-206ENSMUST00000199659 11006 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
Cux1P53564 Parp6-202ENSMUST00000050483 2631 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Tanc1-203ENSMUST00000112568 7422 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Cux1P53564 Myo5a-206ENSMUST00000136731 6480 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
Cux1P53564 Omg-201ENSMUST00000164465 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 St3gal6-202ENSMUST00000114358 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Gm36823-203ENSMUST00000199408 1792 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Gm12535-201ENSMUST00000121025 484 ntBASIC12.17□□□□□ -0.46
Cux1P53564 Gm16523-201ENSMUST00000121253 592 ntBASIC12.17□□□□□ -0.46
Cux1P53564 1700073E17Rik-203ENSMUST00000148424 741 ntBASIC12.17□□□□□ -0.46
Cux1P53564 Gm18875-201ENSMUST00000188563 882 ntBASIC12.17□□□□□ -0.46
Cux1P53564 Gm28548-201ENSMUST00000191599 409 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Gm37273-201ENSMUST00000195132 539 ntTSL 2 BASIC12.17□□□□□ -0.46
Cux1P53564 Gm15396-201ENSMUST00000209101 1089 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Gm29154-253ENSMUST00000217229 1207 ntTSL 5 BASIC12.17□□□□□ -0.46
Cux1P53564 Gm19007-201ENSMUST00000217746 874 ntBASIC12.17□□□□□ -0.46
Cux1P53564 Sh3pxd2b-201ENSMUST00000038753 7413 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Tnfrsf11b-201ENSMUST00000079772 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Epb41l5-202ENSMUST00000052404 6442 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 AC160340.1-201ENSMUST00000222952 3964 ntBASIC12.17□□□□□ -0.46
Cux1P53564 Nkap-201ENSMUST00000016553 4230 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Nt5c1b-217ENSMUST00000219826 2023 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Cux1P53564 Myo18a-201ENSMUST00000000645 7307 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Cux1P53564 Trim9-203ENSMUST00000167755 4559 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Proz-201ENSMUST00000033822 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Eif2ak4-205ENSMUST00000110872 4907 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cux1P53564 Gm43686-201ENSMUST00000197351 2439 ntBASIC12.17□□□□□ -0.46
Cux1P53564 Mbtd1-205ENSMUST00000107853 5245 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 99.8 ms