Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn5aQ9JJV9 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Scn5aQ9JJV9 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.52■□□□□ 0.72
Scn5aQ9JJV9 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn5aQ9JJV9 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Scn5aQ9JJV9 Gm45640-201ENSMUST00000210665 1896 ntBASIC19.51■□□□□ 0.71
Scn5aQ9JJV9 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn5aQ9JJV9 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Scn5aQ9JJV9 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn5aQ9JJV9 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn5aQ9JJV9 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn5aQ9JJV9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn5aQ9JJV9 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Scn5aQ9JJV9 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Scn5aQ9JJV9 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn5aQ9JJV9 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn5aQ9JJV9 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn5aQ9JJV9 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn5aQ9JJV9 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Scn5aQ9JJV9 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Gm43799-201ENSMUST00000201845 579 ntBASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn5aQ9JJV9 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn5aQ9JJV9 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn5aQ9JJV9 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn5aQ9JJV9 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.7
Scn5aQ9JJV9 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
Scn5aQ9JJV9 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.45■□□□□ 0.7
Scn5aQ9JJV9 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn5aQ9JJV9 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn5aQ9JJV9 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn5aQ9JJV9 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn5aQ9JJV9 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Gm20634-201ENSMUST00000090779 2956 ntBASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Gm9987-201ENSMUST00000069768 567 ntBASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn5aQ9JJV9 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn5aQ9JJV9 Gm11643-201ENSMUST00000119578 864 ntBASIC19.42■□□□□ 0.7
Scn5aQ9JJV9 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn5aQ9JJV9 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Scn5aQ9JJV9 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.42■□□□□ 0.7
Scn5aQ9JJV9 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Scn5aQ9JJV9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn5aQ9JJV9 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn5aQ9JJV9 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scn5aQ9JJV9 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms