Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC19.15■□□□□ 0.66
Vps28Q9D1C8 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Vps28Q9D1C8 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps28Q9D1C8 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Vps28Q9D1C8 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Mir5133-201ENSMUST00000174955 77 ntBASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Gm6365-201ENSMUST00000054711 744 ntBASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps28Q9D1C8 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
Vps28Q9D1C8 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Vps28Q9D1C8 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps28Q9D1C8 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Vps28Q9D1C8 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps28Q9D1C8 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
Vps28Q9D1C8 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Vps28Q9D1C8 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms