Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx56Q9D0R4 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Gm42778-201ENSMUST00000199644 553 ntBASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx56Q9D0R4 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Ddx56Q9D0R4 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx56Q9D0R4 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx56Q9D0R4 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Gm13534-201ENSMUST00000121169 513 ntBASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms