Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Gm27032-201ENSMUST00000183124 1116 ntBASIC21.35■■□□□ 1.01
Trim11Q99PQ2 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim11Q99PQ2 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim11Q99PQ2 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim11Q99PQ2 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Trim11Q99PQ2 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim11Q99PQ2 Gm38342-201ENSMUST00000195710 2980 ntBASIC21.35■■□□□ 1.01
Trim11Q99PQ2 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim11Q99PQ2 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC21.35■■□□□ 1.01
Trim11Q99PQ2 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim11Q99PQ2 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim11Q99PQ2 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
Trim11Q99PQ2 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Trim11Q99PQ2 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim11Q99PQ2 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim11Q99PQ2 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim11Q99PQ2 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
Trim11Q99PQ2 Gm38205-201ENSMUST00000192243 258 ntBASIC21.33■■□□□ 1.01
Trim11Q99PQ2 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim11Q99PQ2 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Trim11Q99PQ2 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trim11Q99PQ2 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.32■■□□□ 1
Trim11Q99PQ2 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC21.32■■□□□ 1
Trim11Q99PQ2 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.32■■□□□ 1
Trim11Q99PQ2 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim11Q99PQ2 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC21.31■■□□□ 1
Trim11Q99PQ2 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim11Q99PQ2 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC21.31■■□□□ 1
Trim11Q99PQ2 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim11Q99PQ2 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim11Q99PQ2 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Trim11Q99PQ2 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.31■■□□□ 1
Trim11Q99PQ2 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
Trim11Q99PQ2 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim11Q99PQ2 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim11Q99PQ2 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim11Q99PQ2 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.31■■□□□ 1
Trim11Q99PQ2 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim11Q99PQ2 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim11Q99PQ2 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Trim11Q99PQ2 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.3■■□□□ 1
Trim11Q99PQ2 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim11Q99PQ2 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim11Q99PQ2 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim11Q99PQ2 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim11Q99PQ2 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Trim11Q99PQ2 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim11Q99PQ2 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC21.29■■□□□ 1
Trim11Q99PQ2 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim11Q99PQ2 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim11Q99PQ2 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Trim11Q99PQ2 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim11Q99PQ2 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim11Q99PQ2 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Trim11Q99PQ2 Gm7856-201ENSMUST00000117514 1493 ntBASIC21.28■■□□□ 1
Trim11Q99PQ2 Gm15853-202ENSMUST00000195518 2041 ntBASIC21.28■■□□□ 1
Trim11Q99PQ2 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim11Q99PQ2 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim11Q99PQ2 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms