Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scrt1Q99M85 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
Scrt1Q99M85 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
Scrt1Q99M85 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Scrt1Q99M85 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scrt1Q99M85 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Gm26524-201ENSMUST00000192339 390 ntBASIC16.38■□□□□ 0.21
Scrt1Q99M85 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scrt1Q99M85 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Scrt1Q99M85 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.36■□□□□ 0.21
Scrt1Q99M85 Gm37035-201ENSMUST00000194809 2148 ntBASIC16.36■□□□□ 0.21
Scrt1Q99M85 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Gm37563-201ENSMUST00000192580 1513 ntBASIC16.36■□□□□ 0.21
Scrt1Q99M85 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC16.36■□□□□ 0.21
Scrt1Q99M85 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.36■□□□□ 0.21
Scrt1Q99M85 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Rab3c-203ENSMUST00000224180 967 ntBASIC16.36■□□□□ 0.21
Scrt1Q99M85 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC16.36■□□□□ 0.21
Scrt1Q99M85 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Gm12896-201ENSMUST00000118430 226 ntBASIC16.35■□□□□ 0.21
Scrt1Q99M85 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Scrt1Q99M85 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Scrt1Q99M85 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Scrt1Q99M85 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scrt1Q99M85 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Scrt1Q99M85 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.34■□□□□ 0.21
Scrt1Q99M85 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Scrt1Q99M85 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
Scrt1Q99M85 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Scrt1Q99M85 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Scrt1Q99M85 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Scrt1Q99M85 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms