Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Cstf1Q99LC2 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cstf1Q99LC2 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cstf1Q99LC2 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.71■□□□□ 0.59
Cstf1Q99LC2 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cstf1Q99LC2 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cstf1Q99LC2 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Cstf1Q99LC2 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cstf1Q99LC2 Gm44549-201ENSMUST00000208351 577 ntBASIC18.7■□□□□ 0.58
Cstf1Q99LC2 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cstf1Q99LC2 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cstf1Q99LC2 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cstf1Q99LC2 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cstf1Q99LC2 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cstf1Q99LC2 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cstf1Q99LC2 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cstf1Q99LC2 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cstf1Q99LC2 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cstf1Q99LC2 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cstf1Q99LC2 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.69■□□□□ 0.58
Cstf1Q99LC2 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cstf1Q99LC2 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Cstf1Q99LC2 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Iqck-206ENSMUST00000208658 2891 ntBASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cstf1Q99LC2 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.67■□□□□ 0.58
Cstf1Q99LC2 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cstf1Q99LC2 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cstf1Q99LC2 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC18.67■□□□□ 0.58
Cstf1Q99LC2 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Cstf1Q99LC2 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cstf1Q99LC2 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cstf1Q99LC2 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cstf1Q99LC2 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.67■□□□□ 0.58
Cstf1Q99LC2 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Gm26971-201ENSMUST00000182423 1072 ntBASIC18.66■□□□□ 0.58
Cstf1Q99LC2 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cstf1Q99LC2 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cstf1Q99LC2 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Cstf1Q99LC2 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cstf1Q99LC2 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cstf1Q99LC2 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
Cstf1Q99LC2 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cstf1Q99LC2 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cstf1Q99LC2 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cstf1Q99LC2 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cstf1Q99LC2 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cstf1Q99LC2 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cstf1Q99LC2 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.63■□□□□ 0.57
Cstf1Q99LC2 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cstf1Q99LC2 Gm13158-201ENSMUST00000122007 736 ntBASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms