Protein–RNA interactions for Protein: Q8VHY0

Cspg4, Chondroitin sulfate proteoglycan 4, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cspg4Q8VHY0 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Cspg4Q8VHY0 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cspg4Q8VHY0 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cspg4Q8VHY0 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cspg4Q8VHY0 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cspg4Q8VHY0 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cspg4Q8VHY0 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC16.19■□□□□ 0.18
Cspg4Q8VHY0 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC16.19■□□□□ 0.18
Cspg4Q8VHY0 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cspg4Q8VHY0 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cspg4Q8VHY0 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cspg4Q8VHY0 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 AC140264.2-202ENSMUST00000218746 817 ntBASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 AC175538.1-201ENSMUST00000225343 1269 ntBASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Cspg4Q8VHY0 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cspg4Q8VHY0 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Gm9103-201ENSMUST00000119371 405 ntBASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.16■□□□□ 0.18
Cspg4Q8VHY0 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cspg4Q8VHY0 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.15■□□□□ 0.18
Cspg4Q8VHY0 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Cspg4Q8VHY0 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Cspg4Q8VHY0 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cspg4Q8VHY0 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cspg4Q8VHY0 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cspg4Q8VHY0 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Cspg4Q8VHY0 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cspg4Q8VHY0 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Cspg4Q8VHY0 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.14■□□□□ 0.18
Cspg4Q8VHY0 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cspg4Q8VHY0 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cspg4Q8VHY0 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cspg4Q8VHY0 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cspg4Q8VHY0 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cspg4Q8VHY0 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cspg4Q8VHY0 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cspg4Q8VHY0 Gm6345-202ENSMUST00000180900 204 ntBASIC16.12■□□□□ 0.17
Cspg4Q8VHY0 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cspg4Q8VHY0 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC16.12■□□□□ 0.17
Cspg4Q8VHY0 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms