Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rpa1Q8VEE4 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.85■□□□□ 0.61
Rpa1Q8VEE4 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rpa1Q8VEE4 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rpa1Q8VEE4 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.85■□□□□ 0.61
Rpa1Q8VEE4 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Rpa1Q8VEE4 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.85■□□□□ 0.61
Rpa1Q8VEE4 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.85■□□□□ 0.61
Rpa1Q8VEE4 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rpa1Q8VEE4 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.84■□□□□ 0.61
Rpa1Q8VEE4 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rpa1Q8VEE4 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rpa1Q8VEE4 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rpa1Q8VEE4 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rpa1Q8VEE4 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rpa1Q8VEE4 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rpa1Q8VEE4 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rpa1Q8VEE4 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Rpa1Q8VEE4 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.83■□□□□ 0.61
Rpa1Q8VEE4 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rpa1Q8VEE4 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.83■□□□□ 0.61
Rpa1Q8VEE4 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Rpa1Q8VEE4 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Fst-202ENSMUST00000223640 2612 ntBASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Rpa1Q8VEE4 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rpa1Q8VEE4 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Gm7417-201ENSMUST00000192950 473 ntBASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 AC093043.1-201ENSMUST00000226700 898 ntBASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Serp2-204ENSMUST00000228055 705 ntBASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rpa1Q8VEE4 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rpa1Q8VEE4 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Gm42922-201ENSMUST00000195887 2078 ntBASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Rps24-207ENSMUST00000224568 714 ntBASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Rpa1Q8VEE4 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpa1Q8VEE4 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
Rpa1Q8VEE4 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpa1Q8VEE4 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Rpa1Q8VEE4 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.78■□□□□ 0.6
Rpa1Q8VEE4 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpa1Q8VEE4 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Rpa1Q8VEE4 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Rpa1Q8VEE4 Gm7856-201ENSMUST00000117514 1493 ntBASIC18.77■□□□□ 0.6
Rpa1Q8VEE4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 10.2 ms