Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC22.2■■□□□ 1.14
Trim56Q80VI1 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
Trim56Q80VI1 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC22.2■■□□□ 1.14
Trim56Q80VI1 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
Trim56Q80VI1 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim56Q80VI1 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim56Q80VI1 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trim56Q80VI1 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Trim56Q80VI1 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Trim56Q80VI1 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Trim56Q80VI1 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Trim56Q80VI1 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Trim56Q80VI1 Mir5133-201ENSMUST00000174955 77 ntBASIC22.19■■□□□ 1.14
Trim56Q80VI1 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Trim56Q80VI1 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Trim56Q80VI1 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Trim56Q80VI1 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Trim56Q80VI1 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC22.19■■□□□ 1.14
Trim56Q80VI1 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Trim56Q80VI1 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Trim56Q80VI1 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Trim56Q80VI1 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC22.18■■□□□ 1.14
Trim56Q80VI1 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Trim56Q80VI1 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC22.18■■□□□ 1.14
Trim56Q80VI1 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC22.18■■□□□ 1.14
Trim56Q80VI1 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Trim56Q80VI1 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Trim56Q80VI1 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Trim56Q80VI1 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Gm10602-201ENSMUST00000098239 609 ntBASIC22.17■■□□□ 1.14
Trim56Q80VI1 Gm15853-202ENSMUST00000195518 2041 ntBASIC22.17■■□□□ 1.14
Trim56Q80VI1 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Trim56Q80VI1 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Gm7290-201ENSMUST00000104990 617 ntBASIC22.16■■□□□ 1.14
Trim56Q80VI1 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Gm12918-201ENSMUST00000120234 636 ntBASIC22.16■■□□□ 1.14
Trim56Q80VI1 Gm15710-201ENSMUST00000121821 636 ntBASIC22.16■■□□□ 1.14
Trim56Q80VI1 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Gm5075-201ENSMUST00000196916 622 ntBASIC22.16■■□□□ 1.14
Trim56Q80VI1 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC22.16■■□□□ 1.14
Trim56Q80VI1 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC22.16■■□□□ 1.14
Trim56Q80VI1 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Gm5784-201ENSMUST00000179344 2478 ntBASIC22.16■■□□□ 1.14
Trim56Q80VI1 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Trim56Q80VI1 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Golph3-205ENSMUST00000228671 2842 ntBASIC22.15■■□□□ 1.14
Trim56Q80VI1 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Gm6211-202ENSMUST00000167849 925 ntBASIC22.15■■□□□ 1.14
Trim56Q80VI1 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trim56Q80VI1 BC021767-201ENSMUST00000126387 1716 ntBASIC22.14■■□□□ 1.14
Trim56Q80VI1 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Trim56Q80VI1 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
Trim56Q80VI1 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Trim56Q80VI1 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Trim56Q80VI1 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Trim56Q80VI1 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Trim56Q80VI1 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Trim56Q80VI1 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC22.13■■□□□ 1.13
Trim56Q80VI1 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC22.13■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms