Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Tpm4Q6IRU2 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tpm4Q6IRU2 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
Tpm4Q6IRU2 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
Tpm4Q6IRU2 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Tpm4Q6IRU2 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Gm43137-201ENSMUST00000198052 594 ntBASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Spcs1-204ENSMUST00000226782 949 ntBASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Tpm4Q6IRU2 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Grk6-206ENSMUST00000224995 2971 ntBASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tpm4Q6IRU2 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Tpm4Q6IRU2 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Tpm4Q6IRU2 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Tpm4Q6IRU2 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Tpm4Q6IRU2 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Tpm4Q6IRU2 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Tpm4Q6IRU2 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Tpm4Q6IRU2 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Tpm4Q6IRU2 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Tpm4Q6IRU2 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Tpm4Q6IRU2 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms