Protein–RNA interactions for Protein: Q62231

Six1, Homeobox protein SIX1, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six1Q62231 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Six1Q62231 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC19.3■□□□□ 0.68
Six1Q62231 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
Six1Q62231 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
Six1Q62231 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.3■□□□□ 0.68
Six1Q62231 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.3■□□□□ 0.68
Six1Q62231 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.3■□□□□ 0.68
Six1Q62231 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Six1Q62231 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Six1Q62231 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Six1Q62231 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Six1Q62231 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Six1Q62231 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.29■□□□□ 0.68
Six1Q62231 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.29■□□□□ 0.68
Six1Q62231 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Six1Q62231 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Six1Q62231 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Six1Q62231 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Six1Q62231 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Six1Q62231 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Six1Q62231 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.29■□□□□ 0.68
Six1Q62231 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Six1Q62231 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Six1Q62231 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.28■□□□□ 0.68
Six1Q62231 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Six1Q62231 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Six1Q62231 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Six1Q62231 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.28■□□□□ 0.68
Six1Q62231 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Six1Q62231 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Six1Q62231 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Six1Q62231 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Six1Q62231 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Six1Q62231 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Six1Q62231 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Six1Q62231 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Six1Q62231 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Six1Q62231 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.27■□□□□ 0.68
Six1Q62231 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC19.27■□□□□ 0.68
Six1Q62231 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Six1Q62231 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.27■□□□□ 0.68
Six1Q62231 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Six1Q62231 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Six1Q62231 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.27■□□□□ 0.68
Six1Q62231 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Six1Q62231 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Six1Q62231 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Six1Q62231 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.26■□□□□ 0.67
Six1Q62231 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.26■□□□□ 0.67
Six1Q62231 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six1Q62231 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Six1Q62231 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six1Q62231 Gm38205-201ENSMUST00000192243 258 ntBASIC19.26■□□□□ 0.67
Six1Q62231 Gm40848-201ENSMUST00000221998 324 ntBASIC19.26■□□□□ 0.67
Six1Q62231 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Six1Q62231 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.26■□□□□ 0.67
Six1Q62231 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six1Q62231 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six1Q62231 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Six1Q62231 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.25■□□□□ 0.67
Six1Q62231 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Six1Q62231 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC19.24■□□□□ 0.67
Six1Q62231 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.24■□□□□ 0.67
Six1Q62231 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six1Q62231 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six1Q62231 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six1Q62231 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms