Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col11a1Q61245 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col11a1Q61245 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC21.33■■□□□ 1.01
Col11a1Q61245 Mtag2-201ENSMUST00000058665 714 ntBASIC21.33■■□□□ 1.01
Col11a1Q61245 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC21.33■■□□□ 1
Col11a1Q61245 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.33■■□□□ 1
Col11a1Q61245 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col11a1Q61245 Flg-201ENSMUST00000050758 1488 ntBASIC21.32■■□□□ 1
Col11a1Q61245 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col11a1Q61245 Gm6728-201ENSMUST00000178117 1065 ntBASIC21.32■■□□□ 1
Col11a1Q61245 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC21.32■■□□□ 1
Col11a1Q61245 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col11a1Q61245 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC21.32■■□□□ 1
Col11a1Q61245 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
Col11a1Q61245 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC21.32■■□□□ 1
Col11a1Q61245 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col11a1Q61245 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col11a1Q61245 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.32■■□□□ 1
Col11a1Q61245 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col11a1Q61245 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Col11a1Q61245 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC21.32■■□□□ 1
Col11a1Q61245 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col11a1Q61245 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col11a1Q61245 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Col11a1Q61245 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC21.31■■□□□ 1
Col11a1Q61245 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
Col11a1Q61245 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col11a1Q61245 Zfp783-201ENSMUST00000095946 670 ntBASIC21.31■■□□□ 1
Col11a1Q61245 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Col11a1Q61245 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
Col11a1Q61245 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Col11a1Q61245 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC21.3■■□□□ 1
Col11a1Q61245 Gm27741-201ENSMUST00000185060 237 ntBASIC21.3■■□□□ 1
Col11a1Q61245 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Col11a1Q61245 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col11a1Q61245 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col11a1Q61245 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC21.3■■□□□ 1
Col11a1Q61245 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC21.29■■□□□ 1
Col11a1Q61245 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col11a1Q61245 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Col11a1Q61245 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
Col11a1Q61245 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col11a1Q61245 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col11a1Q61245 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col11a1Q61245 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col11a1Q61245 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.28■■□□□ 1
Col11a1Q61245 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col11a1Q61245 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col11a1Q61245 Otx2os1-204ENSMUST00000227221 751 ntBASIC21.28■■□□□ 1
Col11a1Q61245 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col11a1Q61245 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col11a1Q61245 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.28■■□□□ 1
Col11a1Q61245 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col11a1Q61245 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col11a1Q61245 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col11a1Q61245 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.28■■□□□ 1
Col11a1Q61245 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col11a1Q61245 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col11a1Q61245 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col11a1Q61245 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC21.27■■□□□ 1
Col11a1Q61245 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Col11a1Q61245 Gm12382-201ENSMUST00000122005 922 ntBASIC21.27■■□□□ 1
Col11a1Q61245 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col11a1Q61245 Timm23-208ENSMUST00000226683 750 ntBASIC21.27■■□□□ 1
Col11a1Q61245 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC21.27■■□□□ 1
Col11a1Q61245 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC21.27■■□□□ 1
Col11a1Q61245 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col11a1Q61245 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col11a1Q61245 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Col11a1Q61245 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC21.27■■□□□ 1
Col11a1Q61245 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC21.27■□□□□ 0.99
Col11a1Q61245 Gm43183-201ENSMUST00000200632 547 ntBASIC21.27■□□□□ 0.99
Col11a1Q61245 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col11a1Q61245 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Col11a1Q61245 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC21.26■□□□□ 0.99
Col11a1Q61245 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col11a1Q61245 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col11a1Q61245 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col11a1Q61245 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col11a1Q61245 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col11a1Q61245 Gm5540-201ENSMUST00000131852 1848 ntBASIC21.26■□□□□ 0.99
Col11a1Q61245 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col11a1Q61245 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col11a1Q61245 Gm10517-202ENSMUST00000192970 758 ntBASIC21.25■□□□□ 0.99
Col11a1Q61245 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC21.25■□□□□ 0.99
Col11a1Q61245 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col11a1Q61245 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col11a1Q61245 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col11a1Q61245 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col11a1Q61245 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col11a1Q61245 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col11a1Q61245 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col11a1Q61245 Gm45560-201ENSMUST00000211492 1472 ntBASIC21.24■□□□□ 0.99
Col11a1Q61245 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col11a1Q61245 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col11a1Q61245 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col11a1Q61245 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col11a1Q61245 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col11a1Q61245 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col11a1Q61245 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms