Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usf1Q61069 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usf1Q61069 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usf1Q61069 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usf1Q61069 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.12■□□□□ 0.33
Usf1Q61069 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usf1Q61069 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usf1Q61069 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Usf1Q61069 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Usf1Q61069 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.11■□□□□ 0.33
Usf1Q61069 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Usf1Q61069 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usf1Q61069 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Usf1Q61069 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Usf1Q61069 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC17.1■□□□□ 0.33
Usf1Q61069 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.1■□□□□ 0.33
Usf1Q61069 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.1■□□□□ 0.33
Usf1Q61069 Mir5122-201ENSMUST00000175004 89 ntBASIC17.1■□□□□ 0.33
Usf1Q61069 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.1■□□□□ 0.33
Usf1Q61069 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.1■□□□□ 0.33
Usf1Q61069 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usf1Q61069 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usf1Q61069 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC17.09■□□□□ 0.33
Usf1Q61069 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usf1Q61069 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usf1Q61069 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Usf1Q61069 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Usf1Q61069 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.09■□□□□ 0.33
Usf1Q61069 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Usf1Q61069 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usf1Q61069 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usf1Q61069 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usf1Q61069 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usf1Q61069 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usf1Q61069 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.08■□□□□ 0.33
Usf1Q61069 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Usf1Q61069 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Usf1Q61069 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usf1Q61069 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Usf1Q61069 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usf1Q61069 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usf1Q61069 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usf1Q61069 Gm6433-201ENSMUST00000118634 875 ntBASIC17.08■□□□□ 0.32
Usf1Q61069 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
Usf1Q61069 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usf1Q61069 AC140264.2-202ENSMUST00000218746 817 ntBASIC17.08■□□□□ 0.32
Usf1Q61069 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usf1Q61069 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usf1Q61069 Gm5417-201ENSMUST00000079706 384 ntBASIC17.08■□□□□ 0.32
Usf1Q61069 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
Usf1Q61069 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usf1Q61069 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.08■□□□□ 0.32
Usf1Q61069 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC17.07■□□□□ 0.32
Usf1Q61069 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.07■□□□□ 0.32
Usf1Q61069 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usf1Q61069 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC17.07■□□□□ 0.32
Usf1Q61069 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Usf1Q61069 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usf1Q61069 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usf1Q61069 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usf1Q61069 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usf1Q61069 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usf1Q61069 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usf1Q61069 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usf1Q61069 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usf1Q61069 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usf1Q61069 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usf1Q61069 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usf1Q61069 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usf1Q61069 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC17.06■□□□□ 0.32
Usf1Q61069 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usf1Q61069 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usf1Q61069 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17.06■□□□□ 0.32
Usf1Q61069 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Usf1Q61069 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usf1Q61069 AC152827.1-201ENSMUST00000221143 2189 ntBASIC17.06■□□□□ 0.32
Usf1Q61069 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usf1Q61069 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC17.06■□□□□ 0.32
Usf1Q61069 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usf1Q61069 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms