Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Gm5812-201ENSMUST00000061073 957 ntBASIC17.59■□□□□ 0.41
Trim40Q3UWA4 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.58■□□□□ 0.41
Trim40Q3UWA4 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.58■□□□□ 0.41
Trim40Q3UWA4 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Trim40Q3UWA4 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trim40Q3UWA4 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.58■□□□□ 0.41
Trim40Q3UWA4 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim40Q3UWA4 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim40Q3UWA4 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trim40Q3UWA4 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim40Q3UWA4 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Gm15546-201ENSMUST00000122095 826 ntBASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim40Q3UWA4 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Gm27045-201ENSMUST00000182145 1402 ntBASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim40Q3UWA4 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Gm7856-201ENSMUST00000117514 1493 ntBASIC17.56■□□□□ 0.4
Trim40Q3UWA4 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim40Q3UWA4 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim40Q3UWA4 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim40Q3UWA4 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Trim40Q3UWA4 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim40Q3UWA4 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim40Q3UWA4 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim40Q3UWA4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
Trim40Q3UWA4 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim40Q3UWA4 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms