Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Limch1Q3UH68 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Limch1Q3UH68 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Limch1Q3UH68 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Limch1Q3UH68 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Limch1Q3UH68 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC22.04■■□□□ 1.12
Limch1Q3UH68 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Limch1Q3UH68 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Limch1Q3UH68 Reep4-203ENSMUST00000226563 1444 ntBASIC22.04■■□□□ 1.12
Limch1Q3UH68 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Gm7860-201ENSMUST00000121190 879 ntBASIC22.03■■□□□ 1.12
Limch1Q3UH68 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Limch1Q3UH68 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Limch1Q3UH68 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Limch1Q3UH68 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Limch1Q3UH68 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Limch1Q3UH68 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Limch1Q3UH68 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Limch1Q3UH68 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
Limch1Q3UH68 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Limch1Q3UH68 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Limch1Q3UH68 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC22■■□□□ 1.11
Limch1Q3UH68 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
Limch1Q3UH68 Gm12669-201ENSMUST00000122162 1009 ntBASIC22■■□□□ 1.11
Limch1Q3UH68 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC22■■□□□ 1.11
Limch1Q3UH68 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC22■■□□□ 1.11
Limch1Q3UH68 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Limch1Q3UH68 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
Limch1Q3UH68 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Limch1Q3UH68 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC22■■□□□ 1.11
Limch1Q3UH68 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC22■■□□□ 1.11
Limch1Q3UH68 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Limch1Q3UH68 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Limch1Q3UH68 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Gm9885-202ENSMUST00000186234 2209 ntBASIC21.98■■□□□ 1.11
Limch1Q3UH68 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Limch1Q3UH68 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Limch1Q3UH68 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limch1Q3UH68 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Limch1Q3UH68 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Limch1Q3UH68 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC21.96■■□□□ 1.11
Limch1Q3UH68 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Limch1Q3UH68 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC21.96■■□□□ 1.11
Limch1Q3UH68 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms